GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001753-TA|BGIBMGA001753-PA|IPR001128|Cytochrome P450
         (536 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    55   1e-09
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    55   2e-09
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    39   9e-05
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.90 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   1.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   6.4  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    23   6.4  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              23   8.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   8.4  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 55.2 bits (127), Expect = 1e-09
 Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 9/170 (5%)

Query: 274 EINLDTEAPEKD---FLDGLLRVLHEDPTMDRNTIIFMLEDFL-GGHSSVGNLVMLCLTA 329
           ++++D +  EK    FLD L+        +    +   ++  +  GH +  +     L  
Sbjct: 304 DLDIDDDVGEKKRQAFLDLLIEAGQNGVLLTDKEVKEQVDTIMFEGHDTTASGSSFFLAV 363

Query: 330 VARDPEVGRKIRQEIDAV-TRGKRPVGLTDRSHLPYTEATILECLR-YASSPIVP-HVAT 386
           +   P++  K+ QE+D +     RP    D   + Y E  +LE LR Y   P++   + T
Sbjct: 364 MGCHPDIQEKVIQELDEIFGDSDRPATFQDTLEMKYLERCLLETLRMYPPVPLIAREIKT 423

Query: 387 ENANISG-YGIEKGTVVFINNYVLNNSEQYWSEPEKFDPSRFL-EKTRVR 434
           +    SG Y I  G  V I  + L+     +  P+ FDP  FL EKT  R
Sbjct: 424 DLKLASGDYTIPAGCTVVIGTFKLHRQPHIYPNPDVFDPDNFLPEKTANR 473



 Score = 32.3 bits (70), Expect = 0.010
 Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 473 FIPFSIGKRTCIGQTMVTSMSFTMFANIMQSFEVGVE-NINDLKQKPACVALPKNTYKMH 531
           F+PFS G R+C+G+         + + I+++F V  +   ++ + +   +    + +K+ 
Sbjct: 478 FVPFSAGPRSCVGRKYAMLKLKIVLSTILRNFRVRSDVKESEFRLQADIILKRADGFKIR 537

Query: 532 LIPRK 536
           L PRK
Sbjct: 538 LEPRK 542


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 54.8 bits (126), Expect = 2e-09
 Identities = 38/176 (21%), Positives = 81/176 (46%), Gaps = 3/176 (1%)

Query: 258 SQDIRSFILSRIVEQREINLDTEAPEKDFLDGLLRVLHEDPTMDRNTIIFMLEDFLG-GH 316
           S+D    I+S I+E   I    +  + + ++ + + +     +D       + DF+  G 
Sbjct: 274 SEDAIYNIISEIIETT-IQEKRDDAKDESVEAIFQSILRQKNLDIRDKKAAIVDFIAAGI 332

Query: 317 SSVGNLVMLCLTAVARDPEVGRKIRQEIDAVTRGKRPVGLTDRSHLPYTEATILECLRYA 376
            ++GN ++     + R+P V  K+ +E  A+      + + +     Y  A I E LR  
Sbjct: 333 HTLGNTLVFLFDLIGRNPTVQNKLYEETYALAPAGCDLTIDNLRKAKYLRACITESLRLI 392

Query: 377 -SSPIVPHVATENANISGYGIEKGTVVFINNYVLNNSEQYWSEPEKFDPSRFLEKT 431
            ++  +  +  E   +SGY +  GTVV ++ ++   +E+ + + +K+ P R+   T
Sbjct: 393 PTTTCIARILDEPIELSGYRLTAGTVVLLHTWIAGLNEENFKDAKKYLPERWTTPT 448



 Score = 30.3 bits (65), Expect = 0.042
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 475 PFSIGKRTCIGQTMVTSMSFTMFANIMQSFEVGVENINDLK 515
           PF  G+R C G+  V      + A I++ FE+ VE   DL+
Sbjct: 458 PFGAGRRICPGKRFVDLALQLILAKIIREFEIIVEEELDLQ 498


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 39.1 bits (87), Expect = 9e-05
 Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 4/120 (3%)

Query: 312 FLGGHSSVGNLVMLCLTAVARDPEVGRKIRQEIDAVT-RGKRPVGLTDRSHLPYTEATIL 370
           FL G  +    +   L  +A + +V +K+R+EI+    +  + +   D   + Y +    
Sbjct: 302 FLAGFETSSTTMSNALYELALNQDVQKKLREEINTFCPKNNKELKYDDIKEMEYLDKVFK 361

Query: 371 ECLR-YASSPIVPHVATENA--NISGYGIEKGTVVFINNYVLNNSEQYWSEPEKFDPSRF 427
           E LR Y  + I+   A  +   N +   I K   ++I  + ++     +  P+ FDP RF
Sbjct: 362 ETLRMYPPASILMRKAISDYTFNDTKITIPKEMKIWIPAFAIHRDSAIYPNPDSFDPERF 421



 Score = 26.6 bits (56), Expect = 0.52
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 472 HFIPFSIGKRTCIGQTMVTSMSFTMFANIMQSFEVGV 508
           H++PF  G R CIG       +      I+++ +V V
Sbjct: 433 HYLPFGDGPRNCIGARFAVYQTKVGLITILRNHKVEV 469


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.90
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 22  KTVRWVKTNKYGGVETAILR 41
           KTV W+K  K  G+E A+LR
Sbjct: 337 KTVSWLKDGKPLGLEEAVLR 356


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 193 LMKSAMNMFSNYMCSVRFDDEDLEFQ 218
           L +   ++ +NY C +RF+D  + FQ
Sbjct: 642 LKEEVSSIETNYECGLRFEDPMISFQ 667


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 373 LRYASSPIVPHVATENANISGYGIEKGTVV 402
           L+  S+P+  H+      I  YG EKG  V
Sbjct: 181 LQGISTPVEAHLRKGRGAIGAYGPEKGPKV 210


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 510 NINDLKQKPACVALPKNTYKMHLIPR 535
           NIN ++Q P  V +P   Y  + +PR
Sbjct: 104 NINYIEQIPVPVPIPVPVYYGNFLPR 129


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 381 VPHVATENANISGYGIEKGTVVFINNYVLNNSEQYWSEPEKFDPSRFLEKT 431
           VP  A +   I+ YG E+ T+  + +     SE  W +     P  F+  T
Sbjct: 58  VPQAANKGM-INQYGGEQPTLRLLCSIAGGTSESQWEDVTGSTPLTFVNDT 107


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 477 SIGKRTCIGQTMVTSMSFTMFANIMQSFEV 506
           S+GK T     +  S+ + ++ N M+S EV
Sbjct: 670 SLGKLTETNPKLARSVLYKIYLNTMESHEV 699


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,093
Number of Sequences: 429
Number of extensions: 6453
Number of successful extensions: 27
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 12
length of query: 536
length of database: 140,377
effective HSP length: 61
effective length of query: 475
effective length of database: 114,208
effective search space: 54248800
effective search space used: 54248800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)