Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001752-TA|BGIBMGA001752-PA|IPR002048|Calcium-binding
EF-hand
         (124 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    21   2.6  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   2.6  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   3.5  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   4.6  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    20   8.0  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 9/38 (23%), Positives = 19/38 (50%)

Query: 74  KKARQKSPDSDVHVVLYKDEDLSEIVEGALKQADMNND 111
           +  R K P+ D +    + +D +E +E ++ +   N D
Sbjct: 76  RSKRSKRPNGDTNGDTSQVDDQNESLEASVNENSKNGD 113


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 91  KDEDLSEIVEGALKQADMNNDGYIE 115
           KD D SE+   +  QADM  +  IE
Sbjct: 164 KDRDTSEVESTSNLQADMPLERIIE 188


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 8/14 (57%), Positives = 13/14 (92%)

Query: 87  VVLYKDEDLSEIVE 100
           V L+K+E+LSE+V+
Sbjct: 452 VALFKNENLSEMVK 465


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 12/50 (24%), Positives = 25/50 (50%)

Query: 38  TDDQLEAVLEQALKHTDLNNDGYVDYSEYRFNDYKAKKARQKSPDSDVHV 87
           +D+  E   EQ+L+   +N+ G +   + +  D+ A    ++   S VH+
Sbjct: 176 SDNDAEEYDEQSLRVPKVNSHGKIKTFKCKQCDFVAITKLEQWNHSKVHI 225


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 20  FNNNNIFKRQVDKNYRV 36
           F+ + IF+R+V KN+ +
Sbjct: 111 FDESVIFERKVMKNFAI 127


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.133    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,955
Number of Sequences: 317
Number of extensions: 1125
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 124
length of database: 114,650
effective HSP length: 50
effective length of query: 74
effective length of database: 98,800
effective search space:  7311200
effective search space used:  7311200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)
S2: 39 (19.8 bits)