Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001752-TA|BGIBMGA001752-PA|IPR002048|Calcium-binding
EF-hand
(124 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 31 0.053
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 29 0.28
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 28 0.37
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 27 0.86
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 27 1.1
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce... 26 1.5
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot... 26 2.0
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 2.6
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 2.6
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 25 3.5
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo... 25 3.5
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 3.5
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 24 6.1
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 24 6.1
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 24 6.1
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 24 6.1
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 31.1 bits (67), Expect = 0.053
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 19 TFNNNNIF--KRQVDKNYRVYTDDQLEAVLEQALKHT-DLN-NDGYVDYSEYRFNDYKAK 74
T NN+N++ K+ Y D ++ ++ + + +L+ ND ++ + FN +KA
Sbjct: 79 TENNDNLYNDKKSNGNFYDTNKTDSVDGMVYTTIVDSVELDPNDPLIEQFKDVFNRFKAD 138
Query: 75 KARQKSPDSDVHVVLYKDED-LSEIVEGALKQ 105
+ D+D ++Y D++ LSE E AL++
Sbjct: 139 GQEKDFEDTDKGQIMYSDDEILSEGEEDALQK 170
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 28.7 bits (61), Expect = 0.28
Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 25 IFKRQVDKNYRVYTDDQLEAVLEQALKHTDLNNDGYVDYSEYR 67
+ K V N R +DQL+ ++++ + D + DG + + E++
Sbjct: 118 VLKMMVGTNLR---EDQLQQIVDKTIMEVDKDRDGKISFEEFK 157
Score = 28.3 bits (60), Expect = 0.37
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 91 KDEDLSEIVEGALKQADMNNDGYIEYAEFRTV 122
+++ L +IV+ + + D + DG I + EF+ +
Sbjct: 128 REDQLQQIVDKTIMEVDKDRDGKISFEEFKDI 159
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 28.3 bits (60), Expect = 0.37
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 86 HVVLYKDEDLS-EIVEGALKQADMNNDGYIEYAEFRTV 122
HV+ E LS E V +++AD + DG I Y EF V
Sbjct: 109 HVLTSLGERLSQEEVADMIREADTDGDGVINYEEFSRV 146
Score = 23.8 bits (49), Expect = 8.1
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 91 KDEDLSEIVEGALKQADMNNDGYIEYAEFRTV 122
KD D E V A K D + +GYI E V
Sbjct: 79 KDTDNEEEVREAFKVFDKDGNGYITVEELTHV 110
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 27.1 bits (57), Expect = 0.86
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 40 DQLEAVLEQALKHTDLNNDGYVDYSEYRFNDYKAK---KARQKSPDSDVHVVLYKDEDLS 96
D++E +L+Q L D +DY+ Y F K +AR SP S + +++ L
Sbjct: 521 DEIEMLLDQGLVPCSREEDTKLDYNNYIFFKVPHKDGPEARCGSPLSKSYQRYFEEGILQ 580
Query: 97 EIVEGALKQADMN 109
E A K +M+
Sbjct: 581 SDYEVAKKALEMS 593
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 26.6 bits (56), Expect = 1.1
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 23 NNIFKRQVDKNYRVYTDDQLEAVLEQALKHTDLNNDGYVDYSEYRFNDYKAKKARQKSPD 82
NN K+Q+++ R E V+++ LK + V E + +A ++ K+ +
Sbjct: 369 NNSLKQQIEQLQRELAS---ETVVKENLKSSLDQQSANVQKLE---STNRALESTIKTLE 422
Query: 83 SDVHVVLYKDEDLSEIVEGALKQADMNNDGYIE 115
DV+ + K +L EG LK A++ DG +E
Sbjct: 423 EDVYTMKNKIIEL----EGILKSANVERDGLVE 451
>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 190
Score = 26.2 bits (55), Expect = 1.5
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 61 VDYSEYRFNDYKAKKARQKSPDSDVHVVLYKDEDLSEIVEGAL 103
V+Y E+ K K KS DV+ LY ++DLS+ +E L
Sbjct: 22 VEYCEFE-GTLKKCKEWLKSSHPDVYDKLYGEQDLSKDLENTL 63
>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 25.8 bits (54), Expect = 2.0
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 8 QGH-GFDSHIGQTFNNNNIFKRQVDKNYRVYTDDQLEAV----LEQALKHTDLNNDGYVD 62
QGH +S+ +T N++++ V + D +E V +AL + DL+ +
Sbjct: 3 QGHFTSNSYHSKTLNSSSL---PVSSKFSHTNDPDVEGVDNDSFSKALCNKDLDPSSTIR 59
Query: 63 YSEYRFNDYKAKKARQKSPDSDVHVVLYKDEDLSEI 98
D KA Q+SP++ + +L +D+D +
Sbjct: 60 SVISSLLDSLQDKALQQSPNTSLSKLLLEDQDFGSL 95
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.4 bits (53), Expect = 2.6
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 18 QTFNNNNIFKRQVDKNYRVYTDDQLEAVLEQALKHTDLNNDGYVDYSEYRFNDYKAKKAR 77
QT +N + K ++D++ D L + E ++ GYV+ ++ + + K+KK +
Sbjct: 1863 QTAADNKVTKPRLDESSSS-KQDVLNKIDESEIEQASSKKPGYVEKNKDKGHMKKSKKPK 1921
Query: 78 QK 79
K
Sbjct: 1922 SK 1923
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.4 bits (53), Expect = 2.6
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 41 QLEAVLEQALKHTDLNNDGYVDYSEYRFNDYKAKKARQKSPDSDVHVVLYKDED 94
Q + V E + D +DG Y E F D ++ A + D V+Y D D
Sbjct: 1846 QGDIVNENDENYEDSEDDGV--YEEMEFEDDQSGSADSVVSEDDADDVMYSDND 1897
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 3.5
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 68 FNDYKAKKARQKSPDSDVHVVLYKDEDLSEIVEGALKQADMNN 110
F D A K R+K D + LYK+ E + + D+ N
Sbjct: 318 FRDQSAMKKREKQRSKDEYASLYKEYTRKEQEKLRKQNDDLQN 360
>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 411
Score = 25.0 bits (52), Expect = 3.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 66 YRFNDYKAKKARQKSPDSDVHVVLYKDEDLSEIVEGALKQ 105
Y F+DYK K+ V + ++ D D++E E A K+
Sbjct: 5 YDFSDYKKSDFDPKAQAERVLISVHADSDVNEDKEVARKR 44
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.0 bits (52), Expect = 3.5
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 47 EQALKHTDLNNDGYVDYSEYRFNDYKAKKARQKSPDSDVHVVLYKDEDLSEIV 99
E + + +N+D Y Y N+Y AR DSD V D D+ IV
Sbjct: 813 ENSFRIQVINDDIYPSYVHLDSNNYAIAAAR---GDSDGENVFIYDSDIKRIV 862
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 24.2 bits (50), Expect = 6.1
Identities = 13/66 (19%), Positives = 32/66 (48%)
Query: 28 RQVDKNYRVYTDDQLEAVLEQALKHTDLNNDGYVDYSEYRFNDYKAKKARQKSPDSDVHV 87
R+++KNY VY ++ + ++ DL ++ E + Y+ + + + +++ V
Sbjct: 646 RELEKNYEVYRNEMTAIQESLSKRNQDLLSEMEAIRKELENSKYQQQLSTDRLTNANNDV 705
Query: 88 VLYKDE 93
+K E
Sbjct: 706 EAFKKE 711
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 24.2 bits (50), Expect = 6.1
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 56 NNDGYVDYSEYRFNDYKAKKARQKSPDSDVHVVLYKDEDLSE 97
N YV+ E +D R++S ++ + Y D DLSE
Sbjct: 251 NEASYVEKDESSNSDDSISYKRRRSRNAANRITDYVDSDLSE 292
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 24.2 bits (50), Expect = 6.1
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 61 VDYSEYRFNDYKAKKARQKSPD-SDVH---VVLYKDEDLSEIVEGALKQADMNNDGYIEY 116
+DYSE K +K + D DVH +L+ + + E +E ++AD ++ G + +
Sbjct: 294 IDYSENLNPWEKLEKEQSAQLDLGDVHRMCQMLHLNASM-EFLEETFQKADADHSGKLSF 352
Query: 117 AEFR 120
EF+
Sbjct: 353 EEFQ 356
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 24.2 bits (50), Expect = 6.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 50 LKHTDLNNDGYVDYSEYRFNDYKAKKARQKSPDSD 84
L++ LNN+ ++ + NDY+ K R + SD
Sbjct: 73 LQNEKLNNEKLLEQEQNEANDYRLKVERLEHKISD 107
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.133 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 629,538
Number of Sequences: 5004
Number of extensions: 26494
Number of successful extensions: 92
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 79
Number of HSP's gapped (non-prelim): 20
length of query: 124
length of database: 2,362,478
effective HSP length: 65
effective length of query: 59
effective length of database: 2,037,218
effective search space: 120195862
effective search space used: 120195862
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)
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