GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001752-TA|BGIBMGA001752-PA|IPR002048|Calcium-binding
EF-hand
         (124 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   1.8  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   4.1  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    21   5.4  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    21   5.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    20   9.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
          AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 9/16 (56%), Positives = 13/16 (81%), Gaps = 1/16 (6%)

Query: 6  AAQGHGFDSHI-GQTF 20
          +A GHGFD+H+ G +F
Sbjct: 17 SAGGHGFDAHLRGPSF 32


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
          AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 9/16 (56%), Positives = 13/16 (81%), Gaps = 1/16 (6%)

Query: 6  AAQGHGFDSHI-GQTF 20
          +A GHGFD+H+ G +F
Sbjct: 17 SAGGHGFDAHLRGPSF 32


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 18  QTFNNNNIFKRQVDKNYRVYTDDQLEAVLEQALKHTDLNNDGYVDYSE 65
           +  +N  + KR +  NY V+T  +L +      KH +   D Y+ + E
Sbjct: 574 EMIHNAQVNKRSIHNNYPVHTFGRLTS------KHDNSLYDEYIPFLE 615


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 20  FNNNNIFKRQVDKNY 34
           +NNNN  K+   KNY
Sbjct: 106 YNNNNYNKKLYYKNY 120


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/36 (25%), Positives = 19/36 (52%)

Query: 89  LYKDEDLSEIVEGALKQADMNNDGYIEYAEFRTVAM 124
           L+  ED++  ++ A   ADM+  G ++    + + M
Sbjct: 44  LHISEDIATNIQAAKNGADMSQLGCLKACVMKRIEM 79


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/36 (25%), Positives = 19/36 (52%)

Query: 89  LYKDEDLSEIVEGALKQADMNNDGYIEYAEFRTVAM 124
           L+  ED++  ++ A   ADM+  G ++    + + M
Sbjct: 44  LHISEDIATNIQAAKNGADMSQLGCLKACVMKRIEM 79


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 21  NNNNIFKRQVDKNYRVYTDD 40
           NNNN      + NY  Y ++
Sbjct: 325 NNNNYNNNNYNNNYNNYNNN 344


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.133    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,959
Number of Sequences: 429
Number of extensions: 1679
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 124
length of database: 140,377
effective HSP length: 51
effective length of query: 73
effective length of database: 118,498
effective search space:  8650354
effective search space used:  8650354
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)
S2: 39 (19.8 bits)