Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001751-TA|BGIBMGA001751-PA|IPR002048|Calcium-binding
EF-hand
         (217 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36482| Best HMM Match : efhand (HMM E-Value=6e-06)                  62   3e-10
SB_27027| Best HMM Match : efhand (HMM E-Value=8.7e-08)                29   3.9  
SB_44567| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_36989| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_45073| Best HMM Match : ERM (HMM E-Value=0)                         27   9.1  

>SB_36482| Best HMM Match : efhand (HMM E-Value=6e-06)
          Length = 190

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 5/90 (5%)

Query: 118 IDTSKMSDQELQFHYFKMHDADNNNKLDGCELIKSLIHWHEQGHKQENPPSEAPVGEKIF 177
           ID  K  + +  F++FK+HD DNN KLDG EL+ +L  +HE     ++ P E   G   F
Sbjct: 70  IDIQKGDNNKGIFYFFKLHDYDNNQKLDGLELMSALTDFHE----DDSGPEEKAGGNN-F 124

Query: 178 NEDELVNLIDPILNMDDHNRDGYIDYPEFV 207
            + E   ++D +L   D N+DG + + E +
Sbjct: 125 LDHEAEAIVDEMLEKHDKNKDGMLQFSELM 154


>SB_27027| Best HMM Match : efhand (HMM E-Value=8.7e-08)
          Length = 103

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 5/35 (14%)

Query: 173 GEKIFNEDELVNLIDPILNMDDHNRDGYIDYPEFV 207
           GEK+ +EDE   LID    M D N+DG + + EFV
Sbjct: 24  GEKL-SEDEARELID----MFDKNKDGQLSWEEFV 53


>SB_44567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 759

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 139 DNNNKLDGCELIKSLIHWHEQG 160
           +   +LD  +LI SL+H+H+QG
Sbjct: 452 EKKGRLDPRKLIPSLVHYHQQG 473


>SB_36989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 989

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 157 HEQGHKQENPPSEAPVGEK-IFNEDELVNLIDPILNMDDHNRDGYIDYPEFVRAQQKSQK 215
           H+    Q NP  +  +G +  FNE   + + D + ++ DH    +    +F    + SQK
Sbjct: 114 HQTPDYQNNPLLDYVIGSRNFFNEINYLQVADLLPHLSDHCHISFGLSTDFSADSESSQK 173

Query: 216 Q 216
           Q
Sbjct: 174 Q 174


>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 185 LIDPILNMDDHNRDGYIDYPEF 206
           ++D +   +DH+ DG+I + EF
Sbjct: 265 MVDNVFEYEDHDEDGHISHEEF 286


>SB_45073| Best HMM Match : ERM (HMM E-Value=0)
          Length = 504

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/49 (24%), Positives = 25/49 (51%)

Query: 105 QERDHIQEHMDVPIDTSKMSDQELQFHYFKMHDADNNNKLDGCELIKSL 153
           Q ++  +   D+  D +   D++ Q HY K+HD +  +  D  + +K +
Sbjct: 441 QPQNRSKALQDLSADLAAARDEKKQTHYDKLHDENARHGRDKYKTLKQI 489


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,846,606
Number of Sequences: 59808
Number of extensions: 228121
Number of successful extensions: 511
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 506
Number of HSP's gapped (non-prelim): 6
length of query: 217
length of database: 16,821,457
effective HSP length: 79
effective length of query: 138
effective length of database: 12,096,625
effective search space: 1669334250
effective search space used: 1669334250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)