GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001751-TA|BGIBMGA001751-PA|IPR002048|Calcium-binding
EF-hand
         (217 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    32   0.075
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    29   0.40 
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    29   0.53 
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    27   2.1  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    26   4.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   6.5  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   8.6  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    25   8.6  

>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 31.9 bits (69), Expect = 0.075
 Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 98  LNPANIAQERDHIQEHMDVPIDTSKMSDQELQFHY---FKMHDADNNNKLDGCELIKSLI 154
           L P ++  + D   E ++   +T K+ + EL+  Y   F+  D D  ++LD  E IK L+
Sbjct: 69  LEPTHLINDIDDDNEIIEEKKETEKVEESELEPRYTRVFRDEDDDQKHQLDS-EAIK-LL 126

Query: 155 HWHEQGHKQENPPSEAPVGEKIFNEDE 181
              + G+++ +  S+  +   I +E E
Sbjct: 127 DIADHGNEEISMDSQLEITGNILSETE 153


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 2/87 (2%)

Query: 105 QERDHIQEHMDVPIDTSKMSDQELQFHYFKMHDADNNNKLDGCELIKSLIH-WHEQGHKQ 163
           +E+D   E  +  I T   S+ +  F +++    + NN  +  E I ++     +  H Q
Sbjct: 383 KEKDKFYEIDEQSILTLNNSEMDKYFQWYEKEFVEENNPNNIPEGILNVFPILSKDSHLQ 442

Query: 164 ENPPSEAPVGEKIFNED-ELVNLIDPI 189
           EN P++    E +  ED +L  +  P+
Sbjct: 443 ENQPTDILTDESVIAEDVKLEQVFKPV 469


>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 9/80 (11%)

Query: 133 FKMHDADNNNKLDGCELIKSLIHWHEQGHKQENPPSEAPVGEKIFNEDELVNLIDPILNM 192
           F+++D DNN  +   E+++ +   ++        P +    EK  N+         I NM
Sbjct: 105 FQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNK---------IFNM 155

Query: 193 DDHNRDGYIDYPEFVRAQQK 212
            D N+DG +   EF    ++
Sbjct: 156 MDKNKDGQLTLEEFCEGSKR 175



 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)

Query: 189 ILNMDDHNRDGYIDYPEFVRA 209
           + N+ D +++GYID+ EF+ A
Sbjct: 68  VFNVFDADKNGYIDFKEFICA 88


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 179 EDELVNLIDPILNMDDHNRDGYIDYPEF 206
           ED+L  ++D  +   D +RDG I + EF
Sbjct: 129 EDQLQQIVDKTIMEVDKDRDGKISFEEF 156


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 158 EQGHKQENPPSEAPVGEKIFNEDELVNL 185
           EQ H ++    E P  +K+  EDE +NL
Sbjct: 426 EQNHTEKQVAIETPEQQKVEKEDEHLNL 453


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 10/44 (22%)

Query: 157 HEQGHKQENPPSEAP----------VGEKIFNEDELVNLIDPIL 190
           H   +    PPS AP          VG K  NE EL+N +DP L
Sbjct: 149 HAPNNSNIQPPSAAPPVPGKENYNAVGSKSPNEPELLNSLDPSL 192


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 148  ELIKSLIHWHEQGHK 162
            ELI++ I WHEQ H+
Sbjct: 1817 ELIRAAILWHEQWHE 1831


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 176 IFNEDELVNLIDPILNMDDH 195
           +F  +EL ++  PILNMDD+
Sbjct: 279 LFPSNELSHINKPILNMDDN 298


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 808,517
Number of Sequences: 5004
Number of extensions: 32856
Number of successful extensions: 77
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 10
length of query: 217
length of database: 2,362,478
effective HSP length: 70
effective length of query: 147
effective length of database: 2,012,198
effective search space: 295793106
effective search space used: 295793106
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)