Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001750-TA|BGIBMGA001750-PA|IPR013026|Tetratricopeptide
region, IPR001179|Peptidylprolyl isomerase, FKBP-type,
IPR001440|Tetratricopeptide TPR_1, IPR013105|Tetratricopeptide TPR_2
         (437 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   2.2  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 24/166 (14%)

Query: 6   DVDFQNRKTEMFINGDDDLFPEMXXXXXXXXXXTLRNIEETTKKMMLASPDYLSFE---E 62
           D+++ + KTE+    +DD+ PE                EE  KK+ L S D +      +
Sbjct: 298 DMEYDDIKTELSTGMNDDIPPE------------TEEEEENDKKLDLDSIDMMQLPIQLD 345

Query: 63  LGANMIDCMSTGDVKMLIIEEGKGPLVPVDSE-VTIHYAA-YWEKAVIPFDSTLTMNMGA 120
            G +++D +   D +++ I + K   VP + E + I+  A   ++  + F S L     +
Sbjct: 346 DGIDILDDVKCEDERVISIPD-KEITVPSNEETIDINNGAELMQETHVCFFSLLRDAFTS 404

Query: 121 PKRLRLGTGKIIPGLEIGLTMVKG-PQARLNLLVQPAAAWGPRGVP 165
               R+ TG+    ++  +T  +G P + LN     A++W P  VP
Sbjct: 405 KGEYRMSTGE----MKEAITQWQGNPISPLNDWYSLASSW-PALVP 445


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,848
Number of Sequences: 429
Number of extensions: 4929
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 1
length of query: 437
length of database: 140,377
effective HSP length: 60
effective length of query: 377
effective length of database: 114,637
effective search space: 43218149
effective search space used: 43218149
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)