GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001749-TA|BGIBMGA001749-PA|undefined
         (97 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.08 |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    24   3.6  
SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces pomb...    23   6.4  
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom...    23   8.4  

>SPBC18E5.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 186

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 28  CVGHVLGLGASCVVGTALVEPVTGGRDRARARLNL 62
           CVG V+  G+   +   +++P+ G     +  L L
Sbjct: 123 CVGRVIEFGSENNIQNFIIDPIIGNEASKKVALKL 157


>SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 250

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 39  CVVGTALVEPVTGGRDRARARLN 61
           C+VG  L E     +D+A++ LN
Sbjct: 94  CIVGPTLTEEELASQDQAQSGLN 116


>SPCC1223.08c |dfr1||dihydrofolate reductase
           Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 27  ICVGHVLGLGASCVVGTALVEPVT 50
           I VG V  +G S + G+AL  P+T
Sbjct: 356 IQVGKVFIIGGSFLYGSALYHPLT 379


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.328    0.141    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 366,231
Number of Sequences: 5004
Number of extensions: 11030
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 3
length of query: 97
length of database: 2,362,478
effective HSP length: 62
effective length of query: 35
effective length of database: 2,052,230
effective search space: 71828050
effective search space used: 71828050
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 47 (23.0 bits)