Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001749-TA|BGIBMGA001749-PA|undefined
(97 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1464 + 26726527-26727552 27 1.8
05_03_0177 - 9245131-9245793 27 1.8
06_01_1097 + 8996985-8997635 27 2.4
11_01_0683 - 5595121-5596186,5597214-5597219,5597923-5598836 27 3.1
03_05_1068 + 30114682-30114868,30114947-30115239,30115354-301155... 27 3.1
03_05_0690 + 26778567-26778804,26778950-26779024,26779995-267800... 26 4.1
08_02_1585 - 28052927-28053088,28053343-28053579,28053970-280541... 25 7.2
06_03_0525 - 21742288-21742605,21743348-21743542,21743553-217437... 25 7.2
01_03_0079 - 12267705-12267778,12267841-12267973 25 7.2
01_01_0050 - 382451-382864,382950-383020,383131-383176,383302-38... 25 7.2
05_07_0019 - 27090791-27090945,27091775-27091963,27092635-270926... 25 9.5
04_04_0448 - 25314042-25314183,25314271-25314321,25314437-253150... 25 9.5
03_01_0013 - 105281-105552,105762-105838,105839-106524,106655-10... 25 9.5
02_04_0042 + 19182251-19182562,19182626-19182853 25 9.5
01_01_1055 + 8342761-8342822,8343374-8343791,8343867-8344096,834... 25 9.5
01_01_0743 - 5763654-5766902 25 9.5
>07_03_1464 + 26726527-26727552
Length = 341
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 40 VVGTALVEPVTGGRDRARARLNLSRHVLTIRRA 72
+ G L++P GG +R L L + LT+ A
Sbjct: 200 LAGAVLIQPFFGGEERTEEELELDKAALTLSLA 232
>05_03_0177 - 9245131-9245793
Length = 220
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 7 IRTIKVVLHGMACGSETSVLICVGHVLGLGASCVVGTALVEPVTGGRDRARARL 60
+R + VV + + V +CV + G+ +C++ T + GGR R R R+
Sbjct: 110 VRIVDVVDRVDSLLAAAGVRLCVFYGGGVAFACLLQTERLRRTAGGRRRRRPRM 163
>06_01_1097 + 8996985-8997635
Length = 216
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 7 IRTIKVVLHGMACGSETSVLICVGHVLGLGASCVVGTALVEPVTGGRDRARARL 60
+R + VV + + V +CV + G+ +C++ T + GGR R R R+
Sbjct: 110 VRIVDVVDRVDSLLAAGGVRLCVFYGGGVAFACLLQTGRLRRTAGGRRRRRPRM 163
>11_01_0683 - 5595121-5596186,5597214-5597219,5597923-5598836
Length = 661
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 79 FYGQLRLPCRISS 91
FYGQ LPCR SS
Sbjct: 98 FYGQYHLPCRFSS 110
>03_05_1068 +
30114682-30114868,30114947-30115239,30115354-30115591,
30115977-30117871
Length = 870
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 24 SVLICVGHVLGLGASC-VVGTALVEPVTGGRDRARARLNLSRHVLTI 69
+V+ + LG G +C +V ++LV+P G R R +L + + ++
Sbjct: 37 TVIDGISEFLGRGVTCQLVSSSLVDPNNGNRGRVGTEASLEQWLTSL 83
>03_05_0690 +
26778567-26778804,26778950-26779024,26779995-26780099,
26780869-26781000,26781432-26781571,26782213-26782323,
26782690-26782812,26784166-26784267,26784536-26784546,
26784878-26785103,26785363-26785401,26785413-26785583,
26785674-26785753,26785976-26786039
Length = 538
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 36 GASCVVGTALVEPVTGGRDRARARLNLSRHVLTIRRALNRPPIF 79
G + V+G + E DR R RL L+ LTI AL P+F
Sbjct: 105 GNAIVMGAVVCE---ASLDRVRNRLYLTMKSLTIVTALGMTPLF 145
>08_02_1585 -
28052927-28053088,28053343-28053579,28053970-28054176,
28054797-28054876,28055059-28055137
Length = 254
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 16 GMACGSETSVLICVGHVLGLGASCVVGTALVEPVTGGR 53
G A S + IC +L C +G LV+ TGGR
Sbjct: 173 GKAAASPYNCQICARALLDPFRFCSLGCKLVDTKTGGR 210
>06_03_0525 -
21742288-21742605,21743348-21743542,21743553-21743789,
21745178-21745432,21745516-21745656,21745811-21745972,
21746084-21746244,21747921-21748080
Length = 542
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 34 GLGASCVVGTALVEPVTGGRDRARARLNLSRHVLTIRRALNRPPIFYG 81
G+GA+ VVG + V GG A A L V+ R+ N PP G
Sbjct: 11 GVGAAAVVGVFVAAAVVGGFVAAVA-LAERAGVIAPRKRPNAPPAVPG 57
>01_03_0079 - 12267705-12267778,12267841-12267973
Length = 68
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 12 VVLHGMACGSETSVLICVGHVL 33
+V+HG C E VL+C VL
Sbjct: 18 IVVHGRTCNGELFVLVCDVFVL 39
>01_01_0050 -
382451-382864,382950-383020,383131-383176,383302-383333,
383409-383558,383666-383849,383934-384109,384580-384628,
384724-384923,385515-385548
Length = 451
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 6 AIRTIKVVLHGMACGSETSVLICVGHVLGLGASCVV 41
AI T +V H S + LI VG LG+GAS V
Sbjct: 115 AINTGPIVPHAQPQLSWSRTLIGVGVFLGVGASAAV 150
>05_07_0019 -
27090791-27090945,27091775-27091963,27092635-27092694,
27092793-27092981,27093116-27093209,27093319-27093428,
27093657-27093969
Length = 369
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 14 LHGMACGSETSVLICVGHVLGLGASCVVGTALVEPVTGGRDRARAR 59
LHG + T + G L V A+VEPV GG R +
Sbjct: 262 LHGPRGWASTEAELTDGGALAAEEGVEVRDAIVEPVNGGWGGGRGK 307
>04_04_0448 -
25314042-25314183,25314271-25314321,25314437-25315033,
25315151-25315353
Length = 330
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 61 NLSRHVLTIRRALNRPPIFYGQLRLPCRISSVRNNSA 97
NLSR L IR RPP+ G+LR R+ V +A
Sbjct: 162 NLSR--LRIRAGEGRPPVPLGELRGTARLVIVAGPAA 196
>03_01_0013 -
105281-105552,105762-105838,105839-106524,106655-106738,
106914-107114,107202-107309,107766-107855,108505-108551,
109096-109276,110010-110135,110220-110386,110877-111072
Length = 744
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/36 (27%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 47 EPVTGGR-DRARARLNLSRHVLTIRRALNRPPIFYG 81
+ +TGG ++ + + +HV+ +R+A + P +F G
Sbjct: 220 DSLTGGETNKTDKQFKILKHVIQLRKASSHPYLFSG 255
>02_04_0042 + 19182251-19182562,19182626-19182853
Length = 179
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 14 LHGMACGSETSVLICVGHVLGLGASCVVG 42
L + CG S++ VG V+ +G+S V+G
Sbjct: 72 LCAVICGGGCSLVAAVGEVVPMGSSGVLG 100
>01_01_1055 +
8342761-8342822,8343374-8343791,8343867-8344096,
8344136-8344324,8344458-8344555,8344588-8344742
Length = 383
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 20 GSETSVLICVGHVLGLGASCVVGTA 44
G+E + L+ G LG +C+VGTA
Sbjct: 266 GAELAWLLLDGTWLGFAVACLVGTA 290
>01_01_0743 - 5763654-5766902
Length = 1082
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 3 DRIAIRTIKVVLHGMACGSETSVLICVGHVLGLGASCVVGTALV 46
D AI + + G+ ++ V+ LGLG C VG AL+
Sbjct: 195 DAHAISCVLKCIAGLGSIADGEVVHGYLEKLGLGVQCAVGNALI 238
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.328 0.141 0.422
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,334
Number of Sequences: 37544
Number of extensions: 93979
Number of successful extensions: 317
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 305
Number of HSP's gapped (non-prelim): 16
length of query: 97
length of database: 14,793,348
effective HSP length: 70
effective length of query: 27
effective length of database: 12,165,268
effective search space: 328462236
effective search space used: 328462236
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 52 (25.0 bits)
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