GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001749-TA|BGIBMGA001749-PA|undefined
         (97 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)                     30   0.25 
SB_16910| Best HMM Match : EGF (HMM E-Value=0)                         26   4.1  
SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_56371| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.2  
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               25   7.2  
SB_50494| Best HMM Match : PSD3 (HMM E-Value=6.1)                      25   9.5  
SB_15349| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_30086| Best HMM Match : LIM (HMM E-Value=0.5)                       25   9.5  
SB_6385| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00099)        25   9.5  

>SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2735

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 42   GTALVEPVTGGR--DRARARLNLSRHVLTIRRALNRPPIFYGQLRLPCRISSVRNN 95
            G   + P TG    +++  R   S H+LTIR     PP +YG+  +  ++  V +N
Sbjct: 1311 GQFKINPDTGDLYINKSLDREKNSNHILTIRATNIAPPYWYGEASVGVQVLDVNDN 1366


>SB_16910| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1552

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 22  ETSVLICVGHVLGLGASCVVG 42
           ET +  C+GHV   GA+C+ G
Sbjct: 855 ETKLNHCIGHVCANGATCMNG 875



 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 28   CVGHVLGLGASCVVG 42
            C+GH  G GA+CV G
Sbjct: 991  CIGHECGNGATCVDG 1005


>SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1900

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/37 (35%), Positives = 15/37 (40%)

Query: 21  SETSVLICVGHVLGLGASCVVGTALVEPVTGGRDRAR 57
           SET   IC  H   LG     G     P+ GGR   +
Sbjct: 505 SETQKTICTKHCDALGIQWKPGVKCQHPLHGGRKHGK 541


>SB_56371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1035

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 17  MACGSETSVLICVGHVLGLGASCVVGTALVEPVTGGRDRARARLN----LSRHVLTIRRA 72
           M  G    +L+   +V   G+S VV   ++  VT     A   +N    ++R+ + +   
Sbjct: 509 MPLGDPDHLLLMDINVTSWGSSVVVKKFMLSAVTDEWVSAPYNVNAYYRMTRNEINVLGG 568

Query: 73  LNRPPIFYGQ 82
           + +PP FYG+
Sbjct: 569 MLQPPFFYGR 578


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 10  IKVVLHGMACGSETSVLICVGHV 32
           +K +    ACG+  S+ +CV H+
Sbjct: 640 VKRIRDSRACGNSVSITVCVRHL 662


>SB_50494| Best HMM Match : PSD3 (HMM E-Value=6.1)
          Length = 158

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 42  GTALVEPVTGGRDRARARLNLSRHVLTIRRALN 74
           GT  + P+T G D   A +    H+L  RR LN
Sbjct: 81  GTLNLRPLTYGYDEVGAEMLTPSHLLFGRRLLN 113


>SB_15349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 869

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 19  CGSETSVLICVGHVLGLGASCVVGTAL 45
           CG+ +  L+ +GH LG G + ++   L
Sbjct: 592 CGTRSYRLVLLGHSLGAGTAAILAFLL 618


>SB_30086| Best HMM Match : LIM (HMM E-Value=0.5)
          Length = 715

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 40  VVGTALVEPVTGGRDRARARLNLSRHVLTIRRAL 73
           VV  + + PV   R + R +   S HVLT+   L
Sbjct: 625 VVEVSRLRPVKSYRQKGRTKYTGSHHVLTVDHVL 658


>SB_6385| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00099)
          Length = 437

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 42  GTALVEPVTGGRDRARARLNLSRHVLTIRRALN 74
           GT  + P+T G D   A +    H+L  RR LN
Sbjct: 360 GTLNLRPLTYGYDEVGAEMLTPSHLLFGRRLLN 392


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.328    0.141    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,963,601
Number of Sequences: 59808
Number of extensions: 92607
Number of successful extensions: 237
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 11
length of query: 97
length of database: 16,821,457
effective HSP length: 71
effective length of query: 26
effective length of database: 12,575,089
effective search space: 326952314
effective search space used: 326952314
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 52 (25.0 bits)