GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001749-TA|BGIBMGA001749-PA|undefined
         (97 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF492460-1|AAN64030.1| 1322|Homo sapiens WD repeat 17 protein.         27   9.4  

>AF492460-1|AAN64030.1| 1322|Homo sapiens WD repeat 17 protein.
          Length = 1322

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 5    IAIRTIKVVLHGMACGSETSVLICVGHVLGLGASCVVGTAL 45
            +AI  I++ +  +  G+E  + +CVG VLG  A+     AL
Sbjct: 968  LAIDNIELAMAYLIRGNELELAVCVGTVLGESAAPATHYAL 1008


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.328    0.141    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,742,485
Number of Sequences: 224733
Number of extensions: 397306
Number of successful extensions: 948
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 947
Number of HSP's gapped (non-prelim): 1
length of query: 97
length of database: 73,234,838
effective HSP length: 74
effective length of query: 23
effective length of database: 56,604,596
effective search space: 1301905708
effective search space used: 1301905708
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 57 (27.1 bits)