GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001749-TA|BGIBMGA001749-PA|undefined
         (97 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64854-3|AAB18315.2|  304|Caenorhabditis elegans Hypothetical pr...    25   8.3  

>U64854-3|AAB18315.2|  304|Caenorhabditis elegans Hypothetical
          protein K11C4.2 protein.
          Length = 304

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 53 RDRARARLNLSRHVLTIRRALNRPPIFY 80
          RD     L   +HV++  R LN+PP FY
Sbjct: 4  RDEQVPLLLKRKHVVSGYRPLNQPPSFY 31


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.328    0.141    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,075,405
Number of Sequences: 27539
Number of extensions: 64547
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 1
length of query: 97
length of database: 12,573,161
effective HSP length: 70
effective length of query: 27
effective length of database: 10,645,431
effective search space: 287426637
effective search space used: 287426637
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 52 (25.0 bits)