GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001748-TA|BGIBMGA001748-PA|IPR007205|Protein of unknown
function DUF383, IPR007206|Protein of unknown function DUF384
         (361 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0147 + 13404711-13404764,13404865-13405232,13406105-134061...    48   1e-05
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721...    31   1.4  
09_04_0017 + 13821348-13823404,13823546-13823819,13823916-138242...    29   5.8  

>10_07_0147 +
           13404711-13404764,13404865-13405232,13406105-13406153,
           13406374-13406470,13406863-13407011,13407554-13407667,
           13408196-13408327,13409143-13409256,13410233-13410454
          Length = 432

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 59/261 (22%), Positives = 114/261 (43%), Gaps = 19/261 (7%)

Query: 63  IAKHALLMLVNISAYTRGATELLKYKPLRYKNI-IDLLISYVLNPNKTDADAACMTLSNI 121
           +A+  +++L N++    G   LL+     +  I    + + +LNP+ T      +     
Sbjct: 108 LARSLVMLLANLTQVDSGVAALLQVAHCSFSQIKFHRVNTDILNPDYT------LKFCCF 161

Query: 122 TRLEDELEVCLNTFIPHLNDIMNAFVNTEFNKTGSNL-HYLAPMFSNLACSHRIRKWLCE 180
            ++ DE    L     ++  ++ +F  +       ++  ++A +  N++     R+ L E
Sbjct: 162 QKVGDEKMQGL-----YVAKLVRSFCRSSSESEEEDIFEHVASILVNISKVEAGRRILME 216

Query: 181 ENPHVPLIKLIPFCNYDVSNIRKGGAIGTIRNISFDTDYH-EFLVSPDLDLLTYILYPLM 239
             P   L+K I   +   + +RK G + TIRN  F+ D   + L+S    +   +L P+ 
Sbjct: 217 --PKRGLLKQIIRQSDSTNQLRKKGVVSTIRNCCFEADTQIQNLLSLAEYIWPALLLPVA 274

Query: 240 GNEDYPDDEMEPLPVTL-QYLPKEKRREPDIDIRILILETLNKLCAQRRG-RPYLRENGV 297
           G + Y +++   +P  L   L  E+    + +IR   LE +  +  Q  G R +   NG 
Sbjct: 275 GKKIYSEEDRSKMPPELANALSHEREAVENSEIRQQALEAIYMIVLQDEGRRAFWSVNGP 334

Query: 298 YYIMREYHKWEKDPKALIACE 318
             +   Y   E+DPK + A E
Sbjct: 335 RILQVGYED-EEDPKVMEAYE 354


>12_02_0134 - 14071190-14071435,14071800-14071988,14072114-14072194,
            14072261-14072404,14072528-14072761,14072836-14073981,
            14074863-14074922,14075178-14075420,14075509-14075607,
            14076196-14076367,14076597-14076735,14077514-14077624,
            14077695-14077797,14077885-14077962,14078054-14078122,
            14078203-14078275,14078891-14078975,14079473-14079536,
            14079963-14080073,14080139-14080213,14080306-14080398,
            14080982-14081056,14081172-14081261
          Length = 1259

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 9/95 (9%)

Query: 87   YKPLRYKNIIDLLISYVLNPNKTDADAACMTLSNITRLEDELEVCLNTFIPHLNDIMNAF 146
            Y  L    +I+L++    +P+K     AC  + N     D L   L   IP L  ++ A 
Sbjct: 1085 YSSLATNKVIELVVDRCSDPDKRTRKFACFAVGNAAYHNDMLYEELRRSIPQLTKLLLA- 1143

Query: 147  VNTEFNKTGSNLHYLAPMFSNLACSHRIRKWLCEE 181
               E +KT  N    A   SNL  +  I   LCE+
Sbjct: 1144 --PEEDKTKGN---AAGALSNLVRNSNI---LCED 1170


>09_04_0017 +
           13821348-13823404,13823546-13823819,13823916-13824238,
           13824491-13824604,13825357-13825422,13825638-13825764
          Length = 986

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 315 IACENVVDILIQKEDEVGAEDLSTVEVPEELRERFNKTNSDFMMN 359
           I  + +++++   ED V   D   + +P  LR+RFN+    F ++
Sbjct: 207 IFADKILEVISPDEDYVWVHDYHLMILPTFLRKRFNRVKLGFFLH 251


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.139    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,605,368
Number of Sequences: 37544
Number of extensions: 463478
Number of successful extensions: 1016
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1014
Number of HSP's gapped (non-prelim): 3
length of query: 361
length of database: 14,793,348
effective HSP length: 83
effective length of query: 278
effective length of database: 11,677,196
effective search space: 3246260488
effective search space used: 3246260488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)