GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001748-TA|BGIBMGA001748-PA|IPR007205|Protein of unknown
function DUF383, IPR007206|Protein of unknown function DUF384
         (361 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024818-1|AAK29945.2|  375|Caenorhabditis elegans Hypothetical ...    80   2e-15
Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical pr...    35   0.078
Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical pr...    33   0.42 
U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical pr...    32   0.73 
U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical pr...    32   0.73 
AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q...    31   1.3  
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U41014-4|AAK32946.3|  557|Caenorhabditis elegans Hypothetical pr...    29   6.8  
AF106577-16|AAC78188.1|  369|Caenorhabditis elegans Hypothetical...    29   6.8  
AC006617-1|AAF39770.2|  397|Caenorhabditis elegans Hypothetical ...    29   6.8  
Z81055-4|CAB02893.1|  824|Caenorhabditis elegans Hypothetical pr...    28   9.0  
L25599-9|AAN63393.1|  683|Caenorhabditis elegans Aconitase prote...    28   9.0  
L25599-8|AAL65788.1|  665|Caenorhabditis elegans Aconitase prote...    28   9.0  
L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase prote...    28   9.0  

>AC024818-1|AAK29945.2|  375|Caenorhabditis elegans Hypothetical
           protein Y54H5A.2 protein.
          Length = 375

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 98/368 (26%), Positives = 173/368 (47%), Gaps = 47/368 (12%)

Query: 5   SFDELIEFLKPESRIDLRHISMDYLVSLSGTEDG-VNKMLEHE--RITQAVIELTDDRIK 61
           S D+L++ L P   + +R  +M+ +  L    DG   K  + +   + +A+ +L +    
Sbjct: 7   SVDDLVKLLSPTMSLIVRRKTMEVVTQLGTPLDGSAGKYFQAQDFALGKAICQLCEATSS 66

Query: 62  EIAKHALLMLVNISAYTRGATELLKYKPLRYKNIIDLLISYVLNPNKTDADAACMTLSNI 121
           +  +  L  L N   +T G+ E   +  L     +++  + V+  N   +  A   L N+
Sbjct: 67  DRTE-TLAALTN---FTSGSIEAADFV-LDKSKCVEIAYTAVVT-NALYSSVASRLLVNV 120

Query: 122 TR-----LEDELEVCLNTFIPHL-NDIMNAFVNTEFNK------TGSNLHYLAPMFSNLA 169
           +R     ++ +L+     +I  L N+I  +    + ++      T  NL  L P+  N+ 
Sbjct: 121 SRHFPDRVDHKLKARNANYIGQLLNEIKKSVETGDEDRAKFVGFTVVNLSVLPPIRQNI- 179

Query: 170 CSHRIRKWLCEENPHVPLIKLIPF-CNY----DVSNIRKGGAIGTIRNISFDTDYHEFLV 224
               ++    E +P    +KL+P  C      + + IR+  A   +RN++FD   H  L+
Sbjct: 180 ----VQGGENESSPPSTTMKLLPIVCELLTTAETTEIRECAA-DVLRNLAFDDSLHGSLL 234

Query: 225 SPDLDLLTYILYPLMG-NEDYPDDEMEPLPVTLQYLPKEKRREPDIDIRILILETLNKLC 283
               + L  IL PLM  N++  ++E+  LPV LQY  KE R   DI +R  ++E L +LC
Sbjct: 235 DTSDEYLCSILAPLMDVNDNLDEEEIAKLPVRLQYYEKE-RDSSDI-VRQKLIEALFQLC 292

Query: 284 AQRRGRPYLRENGVYYIMREYHKW-----EKDPKALIACEN------VVDILIQKEDEVG 332
           A + GR  LR  GVY  MRE  K      +K  K L++ +       ++ ILI+ E E+ 
Sbjct: 293 ATKHGREVLRAKGVYPAMRELDKGTETAEDKHKKTLLSSQQEHTLHALIGILIRYESEMD 352

Query: 333 AE-DLSTV 339
            + +LS++
Sbjct: 353 VDPELSSI 360


>Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical protein
            C28A5.2 protein.
          Length = 1218

 Score = 35.1 bits (77), Expect = 0.078
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 7/102 (6%)

Query: 124  LEDELEVCLNTFIPHLNDIMNAFVNTEFNKTGS-NLHYLAPMFSNLACSHRIRKWLCEEN 182
            LED+L V +    P +ND  + F  T  N +    ++YL  M +      +I K + E  
Sbjct: 1122 LEDDLRVKIKKLTP-MNDNNHKFTFTFRNGSLEIGVNYLTDMLTR----GKIYKVMNEMK 1176

Query: 183  PHVPLIKLIPFC-NYDVSNIRKGGAIGTIRNISFDTDYHEFL 223
             HVPL+K++  C   + + I+K  A+  + +  +  + H +L
Sbjct: 1177 KHVPLLKVLSDCIGLNTTYIKKTDAVKMMLHYMYRNELHTYL 1218


>Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical protein
            C28A5.1 protein.
          Length = 1223

 Score = 32.7 bits (71), Expect = 0.42
 Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 124  LEDELEVCLNTFIPHLNDIMNAFVNTEFNKTGSNLHYLAPMFSNLACSHRIRKWLCEENP 183
            LED+L   +   +P  +D          +     L+YL  M +      ++ K L E+  
Sbjct: 1127 LEDDLREKIEYLLPMTDDNHKFQFRARNDSLTIGLNYLTDMLTK----GKVYKMLYEKQE 1182

Query: 184  HVPLIKLIPFC-NYDVSNIRKGGAIGTIRNISFDTDYHEFL 223
            +VPL+K++  C   + + I+K  A+  +    +  + H ++
Sbjct: 1183 YVPLLKVLSDCIGLNTTYIKKTDAVTMMLQFMYRNELHTYM 1223


>U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical
           protein F14B8.5a protein.
          Length = 537

 Score = 31.9 bits (69), Expect = 0.73
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 95  IIDLLISYVLNPNKTDADAACMTLSNITRLEDELEVCLNTFIPHLNDIMNAFVNTEFNKT 154
           ++DL   +  N          +TL+  T L+ +L++ LN  +  +N+ M    +   NKT
Sbjct: 266 VVDLS-KFSTNTGNQGQGTQTLTLTG-TSLQTQLQMNLN--VQCINNFMGPLCDLTCNKT 321

Query: 155 GSNLHYLAPMFSNLACSHRIRKW 177
            +  ++L   FSN   +  + KW
Sbjct: 322 NAQANHLVACFSNRTGTFSLCKW 344


>U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical
           protein F14B8.5b protein.
          Length = 501

 Score = 31.9 bits (69), Expect = 0.73
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 95  IIDLLISYVLNPNKTDADAACMTLSNITRLEDELEVCLNTFIPHLNDIMNAFVNTEFNKT 154
           ++DL   +  N          +TL+  T L+ +L++ LN  +  +N+ M    +   NKT
Sbjct: 230 VVDLS-KFSTNTGNQGQGTQTLTLTG-TSLQTQLQMNLN--VQCINNFMGPLCDLTCNKT 285

Query: 155 GSNLHYLAPMFSNLACSHRIRKW 177
            +  ++L   FSN   +  + KW
Sbjct: 286 NAQANHLVACFSNRTGTFSLCKW 308


>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 85
           protein.
          Length = 2203

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 266 EPDIDIRILILETLNKLCAQRRGRPYLRENGVYYIMREYHKWEKDPKALIACENVVDILI 325
           +PD+ I + ILE L +  A+ R    L+  G   +++     +++ +  I+ +N   +L+
Sbjct: 737 DPDLRIELYILEELRRGSARLRENHALQAVGADKLLKLVAMLDRNIRDAISADN-QRLLV 795

Query: 326 QKEDEVGAEDLSTVEVPEELRER 348
             +D+V   D+   E+ EE  +R
Sbjct: 796 PCDDDVDVGDVLEKEICEERVKR 818


>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical
           protein F21C10.7 protein.
          Length = 2541

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 277 ETLNKLCAQRRGRPYL--RENGVYYIMREYHKWEKDPKALIACENVVDILIQKEDEV--- 331
           E LN   AQ   R  +   EN   Y+  ++ +W++D       E V++ +   + +V   
Sbjct: 553 EWLNIQRAQEAVRNMITDHENRFKYVQHKWTEWQRDKNVQTKVETVIEEIQMWQTDVLEF 612

Query: 332 -GAEDLSTVEVPEELRE 347
            G  D STV   EE+ E
Sbjct: 613 IGKVDNSTVTKKEEVEE 629


>U41014-4|AAK32946.3|  557|Caenorhabditis elegans Hypothetical
           protein C06G1.5 protein.
          Length = 557

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 201 IRKGGAIGTIRNISFDTDYHEFL 223
           +RKGG +  IRN+ FD D ++ L
Sbjct: 298 LRKGGVLQAIRNLQFDDDINKSL 320


>AF106577-16|AAC78188.1|  369|Caenorhabditis elegans Hypothetical
           protein F46F5.10 protein.
          Length = 369

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 26/121 (21%), Positives = 56/121 (46%), Gaps = 8/121 (6%)

Query: 34  GTEDGVNKML----EHERITQAVIELTDDRIKEIAKHALLMLVNISAYTRGATELLKYKP 89
           G  + +NK+L     H+++    ++L+D+ ++ + K+ ++   N + Y      L +Y  
Sbjct: 132 GNFNQMNKLLIQHFPHQKVLLYSLDLSDNELETLDKNVIIRKFNYAKYPNYVRNLKEY-- 189

Query: 90  LRYKN-IIDLLISYVLNPNKTDADAACMTLSNITRLEDELEVCLNTFIPHLNDIMNAFVN 148
            R+K  I+  +IS   N    DA    +    ++ + +E+  C N      N  +  F+N
Sbjct: 190 -RFKALILAEVISEYSNVWWLDAHNRWLQPKPLSYMYEEMAQCYNNDDCKKNSSIFMFLN 248

Query: 149 T 149
           +
Sbjct: 249 S 249


>AC006617-1|AAF39770.2|  397|Caenorhabditis elegans Hypothetical
           protein C39B5.6 protein.
          Length = 397

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 301 MREYHKWEKDPKALIACENVVDILIQKEDEVGAEDLSTVEVPEE 344
           ++ + KW K+ +  + CE   D  + +ED VG +  S V + EE
Sbjct: 196 LKIHGKWLKEVEEELKCEGKADFEVLRED-VGFDARSAVHIAEE 238


>Z81055-4|CAB02893.1|  824|Caenorhabditis elegans Hypothetical
           protein F01G10.5 protein.
          Length = 824

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 4/105 (3%)

Query: 53  IELTDDRIKEIAKHALLMLVNISAYTRGATELLKYKPLRYKNIIDLLISYVLNPNKTDAD 112
           +    DR K+ A +A   L       R ATE L  + + Y    D  I  +L  +KT   
Sbjct: 397 LSFVSDRNKQDADNARAQLEEEREKHRLATEKLHQENIDYMKTSDSRIEMILEESKT--- 453

Query: 113 AACMTLSNITRLEDELEVCLNTFIPHLNDIMNAFVNTEFNKTGSN 157
              M  S I RL  +L+    ++  +L D++N       N   +N
Sbjct: 454 RKMMDESTIERLRLDLD-NEKSYKKNLEDLLNDLNQRALNSEMAN 497


>L25599-9|AAN63393.1|  683|Caenorhabditis elegans Aconitase protein
           2, isoform c protein.
          Length = 683

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 2/109 (1%)

Query: 49  TQAVIELTDDRIKEIAKHALLMLVNISAYTRGATELLKYKPLRYKNIIDLLISYVLNPNK 108
           T A++E     +  I+   +  + N+ A     T +  Y    YK +       +    +
Sbjct: 164 TGAIVEYFGPGVDSISATGMGTICNMGAEIGATTSVFPYNESMYKYLEATGRKEIAEEAR 223

Query: 109 TDADAACMTLSNITRLEDELEVCLNTFIPHLNDIMNAFVNTEFNKTGSN 157
              D   +T  +    +  +E+ L+T  PH+N      + +  +K G N
Sbjct: 224 KYKDL--LTADDGANYDQIIEINLDTLTPHVNGPFTPDLASSIDKLGEN 270


>L25599-8|AAL65788.1|  665|Caenorhabditis elegans Aconitase protein
           2, isoform b protein.
          Length = 665

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 2/109 (1%)

Query: 49  TQAVIELTDDRIKEIAKHALLMLVNISAYTRGATELLKYKPLRYKNIIDLLISYVLNPNK 108
           T A++E     +  I+   +  + N+ A     T +  Y    YK +       +    +
Sbjct: 146 TGAIVEYFGPGVDSISATGMGTICNMGAEIGATTSVFPYNESMYKYLEATGRKEIAEEAR 205

Query: 109 TDADAACMTLSNITRLEDELEVCLNTFIPHLNDIMNAFVNTEFNKTGSN 157
              D   +T  +    +  +E+ L+T  PH+N      + +  +K G N
Sbjct: 206 KYKDL--LTADDGANYDQIIEINLDTLTPHVNGPFTPDLASSIDKLGEN 252


>L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase protein
           2, isoform a protein.
          Length = 777

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 2/109 (1%)

Query: 49  TQAVIELTDDRIKEIAKHALLMLVNISAYTRGATELLKYKPLRYKNIIDLLISYVLNPNK 108
           T A++E     +  I+   +  + N+ A     T +  Y    YK +       +    +
Sbjct: 258 TGAIVEYFGPGVDSISATGMGTICNMGAEIGATTSVFPYNESMYKYLEATGRKEIAEEAR 317

Query: 109 TDADAACMTLSNITRLEDELEVCLNTFIPHLNDIMNAFVNTEFNKTGSN 157
              D   +T  +    +  +E+ L+T  PH+N      + +  +K G N
Sbjct: 318 KYKDL--LTADDGANYDQIIEINLDTLTPHVNGPFTPDLASSIDKLGEN 364


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.139    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,494,733
Number of Sequences: 27539
Number of extensions: 435049
Number of successful extensions: 1086
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1081
Number of HSP's gapped (non-prelim): 14
length of query: 361
length of database: 12,573,161
effective HSP length: 82
effective length of query: 279
effective length of database: 10,314,963
effective search space: 2877874677
effective search space used: 2877874677
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)