GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001748-TA|BGIBMGA001748-PA|IPR007205|Protein of unknown
function DUF383, IPR007206|Protein of unknown function DUF384
         (361 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.3  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   2.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   2.3  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   5.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 10/46 (21%), Positives = 22/46 (47%)

Query: 53  IELTDDRIKEIAKHALLMLVNISAYTRGATELLKYKPLRYKNIIDL 98
           +EL+D++++ +       L  ++  T     +    PL ++N  DL
Sbjct: 388 LELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSDL 433


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 221 EFLVSPDLDLLTYILYPLMGNED 243
           + L  P+ DL+T++ YP + N D
Sbjct: 299 QMLYIPESDLVTFLCYPSVMNLD 321


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 221 EFLVSPDLDLLTYILYPLMGNED 243
           + L  P+ DL+T++ YP + N D
Sbjct: 299 QMLYIPESDLVTFLCYPSVMNLD 321


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 133 NTFIPHLNDIMNAFVNTEFNKTGSNLHYLAPMFSNLACSHRIRK 176
           N ++  L++ M   VN +FN    N   L    +NL  + R  K
Sbjct: 376 NEYMLALSNRMQKIVNNDFNFDEVNFRILGANVNNLIKNTRCAK 419


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.139    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,265
Number of Sequences: 429
Number of extensions: 5314
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 4
length of query: 361
length of database: 140,377
effective HSP length: 59
effective length of query: 302
effective length of database: 115,066
effective search space: 34749932
effective search space used: 34749932
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)