GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001747-TA|BGIBMGA001747-PA|undefined
         (227 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    32   0.060
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    27   1.7  

>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 32.3 bits (70), Expect = 0.060
 Identities = 18/58 (31%), Positives = 29/58 (50%)

Query: 151 KSLYHVCATSDECGDELICGVPNITSTAPDHLYVHSPQEKICLCDTDSGFKEKDHACS 208
           K L+H  ATS  C  +    V +++S    + YV S +++  L   DSG +  D + S
Sbjct: 246 KKLFHTSATSTSCSSKSSSDVSDLSSLPQSNRYVISEEDRSFLNIWDSGGELSDASSS 303


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 173 NITSTAPDHLYVHSPQEKICLCDTDSGFKEKDHACSASIC 212
           +I+ T P H ++   Q ++C  D +S    ++H  S  +C
Sbjct: 347 HISKTGPTHSFIIYIQMQLCFDDLESYLIRRNHFLSFPLC 386


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.133    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 920,366
Number of Sequences: 5004
Number of extensions: 33056
Number of successful extensions: 49
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 2
length of query: 227
length of database: 2,362,478
effective HSP length: 70
effective length of query: 157
effective length of database: 2,012,198
effective search space: 315915086
effective search space used: 315915086
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)