GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001747-TA|BGIBMGA001747-PA|undefined
         (227 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1013 - 7931756-7935109                                           31   1.0  
01_07_0116 + 41168750-41170054                                         29   3.1  
11_01_0644 - 5180148-5180308,5181124-5181305,5181348-5181583           28   5.4  
05_05_0382 + 24547680-24548760,24548887-24549033,24549389-24550023     28   5.4  
03_05_0341 + 23300588-23300710,23300958-23301363,23301463-233016...    28   5.4  

>06_01_1013 - 7931756-7935109
          Length = 1117

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 122 CVRTPYDSATRCLCGDNSPPVNGQCEAQTKSLYHVCATSDECG 164
           C+ T ++  T C CG  S P    C   T S  H C     CG
Sbjct: 557 CLETIFNDLT-CACGRTSIPPPLPCGTPTPSCPHQCLVPQPCG 598


>01_07_0116 + 41168750-41170054
          Length = 434

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 128 DSATRCLCGDNS-PPVNGQCEAQTKSLYHVCATSDECGDELIC--GVPNITSTAPDHLYV 184
           ++ +RC C  +   PV G+C     + + + A +   G +L+C      + + AP+ L  
Sbjct: 110 EAGSRCACTAHPFNPVTGECSTGDLTSFAMSANTTSSGTKLLCPEAFATVGACAPERLLA 169

Query: 185 HSP 187
             P
Sbjct: 170 SLP 172


>11_01_0644 - 5180148-5180308,5181124-5181305,5181348-5181583
          Length = 192

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/31 (41%), Positives = 14/31 (45%)

Query: 58  FPSKLFAVMAVLTVGWLRMPTTDAFGISSFG 88
           F S+ F V      GW RM T D  G   FG
Sbjct: 115 FESRRFLVRESWAAGWKRMRTADGVGYCMFG 145


>05_05_0382 + 24547680-24548760,24548887-24549033,24549389-24550023
          Length = 620

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 122 CVRTPYDSATRCLCGDNSPPVNGQCEAQTKSLYHVCATSDECGD 165
           C R   ++ T C CGD + P   +C++   +  H+     +C D
Sbjct: 32  CTRKKKENRTSC-CGDFTDPHQHECQSSLGNSEHLIEKQCDCED 74


>03_05_0341 +
           23300588-23300710,23300958-23301363,23301463-23301671,
           23301944-23302298,23302392-23302630,23303777-23304055
          Length = 536

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/72 (22%), Positives = 28/72 (38%)

Query: 108 CSHQSECAGISGSSCVRTPYDSATRCLCGDNSPPVNGQCEAQTKSLYHVCATSDECGDEL 167
           C     CAGI   SCV+             ++          T++L  +C++S++ G++ 
Sbjct: 121 CEKVFSCAGIRNGSCVQDKTVDPVDSSGSSSNDTTQSSRSRNTENLTAMCSSSEKSGEDS 180

Query: 168 ICGVPNITSTAP 179
             G     S  P
Sbjct: 181 PSGYEFHESVEP 192


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.133    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,154,029
Number of Sequences: 37544
Number of extensions: 226871
Number of successful extensions: 335
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 334
Number of HSP's gapped (non-prelim): 5
length of query: 227
length of database: 14,793,348
effective HSP length: 80
effective length of query: 147
effective length of database: 11,789,828
effective search space: 1733104716
effective search space used: 1733104716
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)