GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001747-TA|BGIBMGA001747-PA|undefined
         (227 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1753| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.11 
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)                      31   1.0  
SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)                      31   1.0  
SB_17660| Best HMM Match : Meleagrin (HMM E-Value=5.9)                 30   1.8  
SB_15074| Best HMM Match : PID (HMM E-Value=0.00012)                   29   3.2  
SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33)                 29   3.2  
SB_6273| Best HMM Match : MAM (HMM E-Value=0)                          29   4.2  
SB_703| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.2  
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)           28   5.5  
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.5  
SB_15082| Best HMM Match : EGF_CA (HMM E-Value=5.5e-12)                27   9.6  
SB_22531| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_1753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 14/100 (14%)

Query: 122 CVRTPYDS-ATRCLCGDNSPPVNGQCEAQTKSLYHVCATSDECGDELIC--GV-PNITST 177
           C  T  DS +T   C        G C A+    +HVC+T  EC  E  C  G+  N +S 
Sbjct: 13  CCLTGLDSCSTDNECSAFEHCCKGNCTAKRIHCWHVCSTDHECNQESRCVLGICVNCSSA 72

Query: 178 APDHLYVHSPQEKICLCDTDSGFKEKDHACSASICIKTME 217
            P         +K CL DT       +H+C+ + C K  +
Sbjct: 73  FP-------CLKKTCLNDTHC---PNEHSCTNNRCEKVQK 102


>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 921

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 147 EAQTKSLYHVCATSDECGDELICGVPNITSTAPDHLYVHSPQEKICLCDTDSGFKEKDHA 206
           + Q ++ YH+ + + +C D+  C  PN      DH+ +++P    C C      K  + +
Sbjct: 295 KCQCRAGYHLHSDNKQCIDDDECSNPN----RCDHVCINNPGSYACACHKGFFLKLDERS 350

Query: 207 CS 208
           C+
Sbjct: 351 CA 352


>SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 802

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 15/129 (11%)

Query: 113 ECAGISGSS---CVRTPYDSATRC-----LCGDNSPPVN-GQCEAQTKSLYHVCATSD-- 161
           EC   +G     C+ TP     +C     L  DN   +N  +C  +      +C  +D  
Sbjct: 271 ECQNNNGGCRDLCINTPGSFMCQCRQGYVLANDNKTCINLNECATRKHRCEQLCRDTDGG 330

Query: 162 ---ECGDELICGVPNITSTAPDHLYVHSPQEKICLCDTDSGFKEKDHACSASICIKTMEA 218
              EC      G P+  S   + + +H        C  D+G+K+ ++        + M+ 
Sbjct: 331 YYCECHKGYQVG-PDGMSCIGNAVLIHELSHHSYYCTCDTGYKQVNNRTRCQDIDECMDN 389

Query: 219 RGKENRLCV 227
            G   +LCV
Sbjct: 390 NGGCGQLCV 398


>SB_17660| Best HMM Match : Meleagrin (HMM E-Value=5.9)
          Length = 310

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 124 RTPYDSATRCLCGDNSPPV-NGQCEAQTKSLYHVCATSDEC 163
           R P       LCG ++P    GQC     S Y V   SDEC
Sbjct: 157 RPPRSDTYNALCGRDAPYTPGGQCRHNNCSEYDVSYGSDEC 197


>SB_15074| Best HMM Match : PID (HMM E-Value=0.00012)
          Length = 1153

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 117 ISGSSCVRTPYDSATRCLCGDNSPPVNGQCEAQTKSLYHVCATSDECGDELICGVPNITS 176
           +S  + +   +        G NS   N  C++Q +S YH C  S  C    +C  P +  
Sbjct: 129 VSSDTSIAVTHSPGVMLCKGRNSINDNSWCQSQCESFYHFCYFS-RC----LCSHPTMQI 183

Query: 177 TAPD 180
           T+ D
Sbjct: 184 TSTD 187


>SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33)
          Length = 1065

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 108 CSHQSEC---AGISGSSCVRTPYDSATRCLCGDNSPPVNGQCEAQ 149
           C +++EC   +GI G+  + +  + +  C C D    V+G+C  Q
Sbjct: 518 CINENECLRDSGICGTHALCSDLEGSYLCTCEDQYKKVSGRCYPQ 562


>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
          Length = 4272

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)

Query: 108  CSHQSECA-GISGSSCVRTPYDSATRCLCGDNSP 140
            C +Q++C+ G+  +SC    ++ A +C  GDNSP
Sbjct: 2265 CDYQNDCSDGLDEASCGTCNFE-ADQCGWGDNSP 2297


>SB_703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/52 (32%), Positives = 23/52 (44%)

Query: 109 SHQSECAGISGSSCVRTPYDSATRCLCGDNSPPVNGQCEAQTKSLYHVCATS 160
           S  +  +G  G++ V      AT CLC      V+G C A  KSL +    S
Sbjct: 2   SCNASVSGSCGTAGVCVAKSDATACLCPIGYELVDGICTAPEKSLPYAAVAS 53


>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
          Length = 1078

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 170 GVPNITSTAPDHLYVHSPQEKIC-LCDTDSGFKEKDH 205
           G PN+++     LYVH  +   C +C  D  FK +DH
Sbjct: 465 GFPNLSALKGHKLYVHGEKRFKCEVC--DKSFKREDH 499


>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 129 SATRCLCGDNSPPVNGQCEAQTKSLYHVCATSDECGDELICGVPNITSTAPDHLYVHSPQ 188
           +A+ C+C   S       E + +SLY V     +C  ELIC + N  +       ++SP 
Sbjct: 347 NASLCVCARISLRARYFPEEENRSLY-VGNLDPKCTQELICSIFNKIAKVVRCKMINSPT 405

Query: 189 EKICLC 194
           +K   C
Sbjct: 406 DKGPYC 411


>SB_15082| Best HMM Match : EGF_CA (HMM E-Value=5.5e-12)
          Length = 125

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 155 HVCATSDECGDELICGVPNITST 177
           H+C+  DECG+ +    PN T T
Sbjct: 36  HLCSDIDECGENVHACSPNATCT 58


>SB_22531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 579

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 127 YDSATRCLCGDNSPPVNGQCEAQTKSLYHVCATSDECGDELI 168
           +  A + +CG + P    Q  A  K LY VC  +     +LI
Sbjct: 92  FAKACKAVCGKSDPVEESQGTAPCKELYAVCTQASGQAADLI 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.133    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,213,533
Number of Sequences: 59808
Number of extensions: 285812
Number of successful extensions: 1185
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1178
Number of HSP's gapped (non-prelim): 14
length of query: 227
length of database: 16,821,457
effective HSP length: 80
effective length of query: 147
effective length of database: 12,036,817
effective search space: 1769412099
effective search space used: 1769412099
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)