GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001747-TA|BGIBMGA001747-PA|undefined
         (227 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr...    31   0.51 
AF039046-14|AAB94214.1|  388|Caenorhabditis elegans Prion-like-(...    31   0.68 
AF016451-14|AAB66007.1|  445|Caenorhabditis elegans Activated in...    30   1.2  
AF016451-3|AAB66001.1|  388|Caenorhabditis elegans Prion-like-(q...    30   1.6  
AF016451-5|AAB65995.1|  438|Caenorhabditis elegans Activated in ...    29   2.1  
AF016451-4|AAB65996.1|  388|Caenorhabditis elegans Activated in ...    29   2.1  
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    29   3.6  
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ...    28   6.3  
Z81119-7|CAB03338.2|  310|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical p...    27   8.4  
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
            F54F3.1 protein.
          Length = 1584

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 30/126 (23%), Positives = 42/126 (33%), Gaps = 8/126 (6%)

Query: 109  SHQSECA-GISGSSCVRTPYDSATRCLCGDNSPPVNGQC--EAQTKSLYHVCATSDECGD 165
            +H  +C  G  G      PY  AT C         N QC     T +   +C        
Sbjct: 1132 AHACKCVDGFKGDGTSCVPYAPATNCNLEPRICHANAQCVMHHDTNAYECICKPGSSGDG 1191

Query: 166  ELICGV---PNITSTAPDHLYVHSPQEKICLCDTDSGFKEKDHAC-SASICIKTMEARGK 221
               C V   P  T+ +       +P      C  ++G+    H C S S C+    +   
Sbjct: 1192 YTKCDVIETPRCTNCSIHAYCAQNPTSGAYQCKCNAGYNGNGHLCVSMSSCLDD-RSLCD 1250

Query: 222  ENRLCV 227
            EN  CV
Sbjct: 1251 ENADCV 1256


>AF039046-14|AAB94214.1|  388|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 54
           protein.
          Length = 388

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 107 SCSHQSECAGISGSSCVRTPYDSATRCLCGDN-SPPVNGQC 146
           SCS   + A  + ++C ++P      C C  N SP  NGQC
Sbjct: 344 SCSSSCQAAQPATTACQQSPQSPQNSCSCQANYSPCGNGQC 384


>AF016451-14|AAB66007.1|  445|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 8 protein.
          Length = 445

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 107 SCSHQSECAGISGSSCVRTPYDSATRCLCGDN-SPPVNGQC 146
           SCS+  + A  + ++C ++P  S+  C C  N SP  NGQC
Sbjct: 403 SCSNSCQAAQPATTACQQSPQQSS--CSCQTNYSPCGNGQC 441


>AF016451-3|AAB66001.1|  388|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 5
           protein.
          Length = 388

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 107 SCSHQSECAGISGSSCVRTPYDSATRCLCGDN-SPPVNGQC 146
           SCS+  + A  + ++C ++P  S+  C C  N SP  NGQC
Sbjct: 346 SCSNSCQAAQPATTACQQSPQQSS--CSCQANYSPCGNGQC 384


>AF016451-5|AAB65995.1|  438|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 7 protein.
          Length = 438

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 107 SCSHQSECAGISGSSCVRTPYDSATRCLCGDN-SPPVNGQC 146
           SCS+  + A  + ++C ++P  S+  C C  N SP  NGQC
Sbjct: 396 SCSNSCQTAQPATTACQQSPQQSS--CSCQANYSPCGNGQC 434


>AF016451-4|AAB65996.1|  388|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 6 protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 107 SCSHQSECAGISGSSCVRTPYDSATRCLCGDN-SPPVNGQC 146
           SCS+  + A  + ++C ++P  S+  C C  N SP  NGQC
Sbjct: 346 SCSNSCQTAQPATTACQQSPQQSS--CSCQANYSPCGNGQC 384


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 13/78 (16%)

Query: 108  CSHQSECAGISGSSCVRTPYDSATRCLCGDNSPPVNGQCEAQT--KSLYHV--CATSDEC 163
            C+  SEC G  GS C+        RC C ++   +NG C+      S  H   C+   EC
Sbjct: 1954 CTFDSECTG--GSICIDK------RCACRNDHEMINGVCQLANLPGSRCHTSFCSKGAEC 2005

Query: 164  -GDELICGVPNITSTAPD 180
                 +C   N + +  D
Sbjct: 2006 RNGYCVCAKTNYSDSTLD 2023



 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 157 CATSDECGDELICGVPNITSTAPDHLY-----VHSPQEKICLCDTDSGFKEKDHACSASI 211
           C++ D+CG+ L+CG     S  P+ L+       S  +    C +D    E++  C  + 
Sbjct: 780 CSSRDDCGEGLMCGASGKCS-CPEGLFSVNGKCRSYVQLGQTCTSDDRCAERNAQCQENY 838

Query: 212 C 212
           C
Sbjct: 839 C 839


>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
            protein Y55F3BR.2 protein.
          Length = 1594

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 135  CGDNSPPVNGQCEAQTKSLYHVCATSDECGDELIC 169
            CGDN   V+G C  + K +   C T++EC +   C
Sbjct: 1235 CGDNEAMVDGGCVVRVK-VGGGCHTNEECVEGADC 1268


>Z81119-7|CAB03338.2|  310|Caenorhabditis elegans Hypothetical
           protein T10H4.9 protein.
          Length = 310

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 56  KMFPSKLFAVMAVLTVGWLRMPTTDAFGISSFGK 89
           KM PS+ +A   + TV W+ + T D     SF K
Sbjct: 242 KMDPSERWACFVLSTVAWISVHTLDGIITLSFNK 275


>Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical
           protein M163.11 protein.
          Length = 224

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query: 114 CAGISGSSCVRTPYDSATRCLCGDNSPPVNGQCEAQTKSLYHVCATSDE 162
           C     ++  +T Y ++T  LC D+S   +    A T S     ATS +
Sbjct: 18  CTSTFYTTAQKTQYCASTCSLCSDSSDSSSSSSTASTSSSSSTAATSSD 66


>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical
           protein F48E3.8b protein.
          Length = 1299

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 157 CATSDECGDELICGVPNITSTAPDHLY-----VHSPQEKICLCDTDSGFKEKDHACSASI 211
           C++ D+CG+ L+CG     S  P+ L+       S  +    C +D    E++  C  + 
Sbjct: 780 CSSRDDCGEGLMCGASGKCS-CPEGLFSVNGKCRSYVQLGQTCTSDDRCAERNAQCQENY 838

Query: 212 C 212
           C
Sbjct: 839 C 839


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.133    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,277,725
Number of Sequences: 27539
Number of extensions: 207075
Number of successful extensions: 394
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 381
Number of HSP's gapped (non-prelim): 23
length of query: 227
length of database: 12,573,161
effective HSP length: 79
effective length of query: 148
effective length of database: 10,397,580
effective search space: 1538841840
effective search space used: 1538841840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)