Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001746-TA|BGIBMGA001746-PA|IPR013032|EGF-like region,
IPR006149|Nematode-specific EB region, IPR009030|Growth factor,
receptor
         (565 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    27   0.55 
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    27   0.55 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   1.3  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    25   1.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   3.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   3.9  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    23   6.7  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           23   6.7  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   8.9  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 26.6 bits (56), Expect = 0.55
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 75  RGRCWPIAEYGATCTRHEE--CLSVMRDPFSLR-CDGTCVCATGYYSRQRGEC 124
           RG+C P  E  + C    +  C +V+  P  ++ C   CVC  GY   ++  C
Sbjct: 34  RGKC-PSNEIFSRCDGRCQRFCPNVVPKPLCIKICAPGCVCRLGYLRNKKKVC 85


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 26.6 bits (56), Expect = 0.55
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 75  RGRCWPIAEYGATCTRHEE--CLSVMRDPFSLR-CDGTCVCATGYYSRQRGEC 124
           RG+C P  E  + C    +  C +V+  P  ++ C   CVC  GY   ++  C
Sbjct: 34  RGKC-PSNEIFSRCDGRCQRFCPNVVPKPLCIKICAPGCVCRLGYLRNKKKVC 85


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 375 GLCVTSGLVLGEACQVSLECSGTENAVCTDGVCSCNTGYQ 414
           G CV + +V+    Q +  C G        G C C  GYQ
Sbjct: 218 GTCVANAVVIE---QPTFLCKGDGKWYLPSGGCHCKPGYQ 254


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 197 VEGQFCDLNNPCPSPYQCSKFSSCVCPVGYYGNEAGTLCLAELGS---PSTSE 246
           V G    L  P P     S   SC CP G      G +C+ ++ +   P+T E
Sbjct: 39  VNGHCSHLCLPAPRINSKSPLLSCACPDGLKLLSDGLMCVEKVSTTIVPTTQE 91



 Score = 23.0 bits (47), Expect = 6.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 43 SCACPHGHQSVLGGSLC 59
          SCACP G + +  G +C
Sbjct: 61 SCACPDGLKLLSDGLMC 77


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 454 ERFVAYDDECW 464
           ER  ++DDECW
Sbjct: 822 ERLPSFDDECW 832


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 454 ERFVAYDDECW 464
           ER  ++DDECW
Sbjct: 860 ERLPSFDDECW 870


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 13/40 (32%), Positives = 15/40 (37%)

Query: 197 VEGQFCDLNNPCPSPYQCSKFSSCVCPVGYYGNEAGTLCL 236
           V G    L  P P     S   SC CP G      G +C+
Sbjct: 39  VNGHCSHLCLPAPRINSKSPLLSCACPDGLKLLSDGLMCV 78



 Score = 23.0 bits (47), Expect = 6.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 43 SCACPHGHQSVLGGSLC 59
          SCACP G + +  G +C
Sbjct: 61 SCACPDGLKLLSDGLMC 77


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 10/29 (34%), Positives = 11/29 (37%)

Query: 381 GLVLGEACQVSLECSGTENAVCTDGVCSC 409
           G V   AC  +    G     C  GVC C
Sbjct: 28  GQVNDSACAANCHSLGKAGGHCEKGVCIC 56


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 269 DENMRDCV-KVTRRITDSCVSDMNCFTFGSAARC 301
           D +++D + K+ R+  D+  ++  C T    +RC
Sbjct: 87  DMDLKDSIRKIIRQCVDNAKNEDKCLTAQKFSRC 120


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.139    0.482 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,744
Number of Sequences: 429
Number of extensions: 8158
Number of successful extensions: 27
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 12
length of query: 565
length of database: 140,377
effective HSP length: 61
effective length of query: 504
effective length of database: 114,208
effective search space: 57560832
effective search space used: 57560832
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 46 (22.6 bits)