GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001746-TA|BGIBMGA001746-PA|IPR013032|EGF-like region,
IPR006149|Nematode-specific EB region, IPR009030|Growth factor,
receptor
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    33   0.11 
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    27   7.0  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   9.2  
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb...    27   9.2  

>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 12/16 (75%), Positives = 12/16 (75%)

Query: 499 EGFHHRGGRCWPITGL 514
           EGFHHR  R WPIT L
Sbjct: 266 EGFHHRASRYWPITNL 281


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 387 ACQVSLECSGTENAVCTDGVCSCNTGYQQVDDF 419
           AC    + SG+ NAVC     SC+  +  VD F
Sbjct: 48  ACLTCQKASGSLNAVCYSCSISCHADHDLVDLF 80


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/42 (33%), Positives = 18/42 (42%)

Query: 117 YSRQRGECRKIAAAVGEGCVLDEDCQFPGGACNVNTFRCYDV 158
           YS  RGE     A VG   V   D  +  G C+  T   ++V
Sbjct: 100 YSHNRGEDNDSPARVGHSIVCSADTIYLFGGCDSETDSTFEV 141


>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 335 IGETCEVDSDCLAGELEIQCVKDEAGQGYCTCPEDLIAVDGLC 377
           +G  CEV+S+    +LE +   DE  +  C   +     D LC
Sbjct: 223 VGNNCEVNSEDEFSDLESEVDPDELEKAMCPISDMFNGDDELC 265


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.139    0.482 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,442
Number of Sequences: 5004
Number of extensions: 112715
Number of successful extensions: 218
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 213
Number of HSP's gapped (non-prelim): 5
length of query: 565
length of database: 2,362,478
effective HSP length: 76
effective length of query: 489
effective length of database: 1,982,174
effective search space: 969283086
effective search space used: 969283086
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)