Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001746-TA|BGIBMGA001746-PA|IPR013032|EGF-like region,
IPR006149|Nematode-specific EB region, IPR009030|Growth factor,
receptor
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0860 - 21136509-21136997 37 0.049
04_04_1420 + 33441260-33443704 36 0.086
06_03_1036 + 27053480-27053729,27054616-27054704,27054881-270549... 34 0.35
05_01_0498 + 4152729-4152820,4153316-4153425,4153840-4153877,415... 31 2.4
01_01_0868 - 6780919-6783207 31 3.2
01_06_1618 - 38681729-38683989,38685577-38685796 30 5.7
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 30 5.7
11_01_0674 - 5502275-5502954,5503054-5504746 29 7.5
06_03_0416 + 20568087-20568702,20568767-20570313 29 7.5
04_01_0286 + 3800617-3801720,3801945-3801989,3802063-3802203,380... 29 7.5
08_02_1159 + 24773328-24773994,24775430-24775558,24776080-247762... 29 9.9
04_04_1002 - 30025914-30026021,30026116-30026297,30026626-300269... 29 9.9
>10_08_0860 - 21136509-21136997
Length = 162
Score = 36.7 bits (81), Expect = 0.049
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 211 PYQCSKFSSCVCPVGYYGNEAGTLCLAEL---GSPSTS-EQCVGLLAEVRD---GVCTCP 263
P+ K ++C +G G G L L L SPS+S EQC GLLA + D VC C
Sbjct: 65 PFDALKLAACADVLGGGGGGGGLLNLGHLLGNSSPSSSGEQCCGLLAGLADVDAAVCLCT 124
Query: 264 A 264
A
Sbjct: 125 A 125
>04_04_1420 + 33441260-33443704
Length = 814
Score = 35.9 bits (79), Expect = 0.086
Identities = 40/124 (32%), Positives = 51/124 (41%), Gaps = 15/124 (12%)
Query: 196 VVEGQFCDLNNPCPSPYQCS--KFSSCVCPVGYYGNEAGTLCLAELGSPSTSEQCVGLLA 253
V G+ C ++ C S CS +C CPVGY N+A SP +C G
Sbjct: 283 VAVGRQCYVHGLCGSNGICSFRPGPTCSCPVGYVPNDASDWSKGCRRSPDV--RCGG--D 338
Query: 254 EVRDGVCTCPANFF-FDENMRDCV--KVTRRITDSCVSDMNCFTFG---SAARCGPPQQP 307
+V D V +F+ FD N V RR+ C+ D NC FG RC P
Sbjct: 339 DVVDFVEMPHTDFWGFDVNYTAGVTFDACRRL---CLDDCNCKAFGYRPGTGRCYPKIAL 395
Query: 308 WQLR 311
W R
Sbjct: 396 WNGR 399
>06_03_1036 +
27053480-27053729,27054616-27054704,27054881-27054950,
27055145-27055228,27055332-27055408,27055519-27055583,
27055723-27055765,27055889-27055952,27056126-27056254,
27056522-27056625,27056724-27056828
Length = 359
Score = 33.9 bits (74), Expect = 0.35
Identities = 31/127 (24%), Positives = 48/127 (37%), Gaps = 9/127 (7%)
Query: 432 SDCVIPNTACFEIDNSMTCQCKERFVAYDDECWPNVDGFQSACNVTAQCTQALGNEGVCL 491
++C+ N C+ + + CK+ F EC P V+G Q + Q G + L
Sbjct: 169 NECLHRNGGCWRDEKTNVTACKDTFRGRVCEC-PVVNGVQYEGD-GCWARQVYGGQRRLL 226
Query: 492 DGA---CACVEGFHHRGGRCWPITGLFEVCNRDSQCFLGDLTERVVCRNSLCQCDFSYPY 548
D A C C GF G +C + + C C + + N C+C + Y
Sbjct: 227 DTALTGCRCPPGFQGDGHKCEDL----DECKEKLACTCPNCHCKNTWGNYECKCKGNQIY 282
Query: 549 SEELHTC 555
TC
Sbjct: 283 IRGEDTC 289
>05_01_0498 +
4152729-4152820,4153316-4153425,4153840-4153877,
4154335-4154433,4154461-4157475
Length = 1117
Score = 31.1 bits (67), Expect = 2.4
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 526 LGDLTERVVCRNSLCQCDFSYPYSEELHTCSEYIHLNLNG 565
LGDLTE + L +FS EL CS HLNL+G
Sbjct: 757 LGDLTELKIL--DLSNNNFSGDIPPELSNCSRLTHLNLDG 794
>01_01_0868 - 6780919-6783207
Length = 762
Score = 30.7 bits (66), Expect = 3.2
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 464 WPNVDGFQSACNVTA-QCTQALGNEGVCLD-GACACVEGFHHRGGRCWPITGLFEVCNR 520
W +V S+C V+A C G G+C G C C++GF W + C+R
Sbjct: 264 WQSVWSHPSSCKVSAFHC----GAFGICTSTGTCKCIDGFRPTEPNEWELGHFGSGCSR 318
>01_06_1618 - 38681729-38683989,38685577-38685796
Length = 826
Score = 29.9 bits (64), Expect = 5.7
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Query: 471 QSACNVTAQCTQALGNEGVCLDGA---CACVEGFHHRGGRCW 509
++ C+V + C G GVC + A C+C+ GFH R R W
Sbjct: 314 KAQCDVYSIC----GAFGVCAEDALPACSCLRGFHARQPRRW 351
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 29.9 bits (64), Expect = 5.7
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 418 DFCAPVIGGTCSVDSDCVIPNTACFEIDNSMTCQCKERFVAYDDECWPNVDGFQSAC--- 474
D C+ V+ V S PNT ++N+ + + ++ D+C ++ G S
Sbjct: 485 DGCSRVLVDGLVVSSPASSPNTDGVHVENTSSVRILNSRISNGDDC-VSIGGGCSGVRVE 543
Query: 475 NVTAQCTQALGNEGVCLDGACACVEGFHHRGGR 507
NVT + G+ GA ACV RG R
Sbjct: 544 NVTCVHGHGISIGGLGARGARACVSNVTVRGAR 576
>11_01_0674 - 5502275-5502954,5503054-5504746
Length = 790
Score = 29.5 bits (63), Expect = 7.5
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 472 SACNVTAQCTQALGNEGVCLDGA----CACVEGFHHRGGRCWPITGLFEVCNRDS 522
+AC + C G GVC DG+ C C+EGF + + W + C R++
Sbjct: 320 AACGPFSFCIATCGPFGVC-DGSRKPFCDCMEGFSPKSPQDWELMDRTAGCFRNT 373
>06_03_0416 + 20568087-20568702,20568767-20570313
Length = 720
Score = 29.5 bits (63), Expect = 7.5
Identities = 42/146 (28%), Positives = 59/146 (40%), Gaps = 27/146 (18%)
Query: 386 EACQVSLECSGTENAVCTDGVCSCNTGYQQVDDFCAPVIGGTCSVDSDCVIPNTACFEID 445
+ C L C E +C+ G CSC D G VD+ V N CF +
Sbjct: 272 DPCAYPLACG--EYGICSHGQCSC-------PDVAIGQSGLFELVDAKGV--NHGCF-LT 319
Query: 446 NSMTCQC--KERFVAYDDECWPNVDGFQSACNVTAQCTQALGNEGVCLDGACAC-VEGFH 502
+S+TC K RF+A PNV F N T T + C+D C+C F
Sbjct: 320 SSLTCGSARKTRFLAV-----PNVTHFNFVYNWT---TNEDHCKLSCMDD-CSCRASFFQ 370
Query: 503 HR---GGRCWPITGLFEVCNRDSQCF 525
H+ G C+ +F + N +Q +
Sbjct: 371 HKDISSGFCFLAFNIFSMINFSAQSY 396
>04_01_0286 +
3800617-3801720,3801945-3801989,3802063-3802203,
3802368-3802397,3802519-3803025
Length = 608
Score = 29.5 bits (63), Expect = 7.5
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 471 QSACNVTAQCTQALGNEGVCLDGA---CACVEGFHHRGGRCWPITGLFEVCNRD 521
+++C+V++ C G +C D A C C++GF + R W + E C R+
Sbjct: 273 KASCDVSSVC----GPYTICNDNALTLCNCMKGFSVKSPRDWELDDRREGCTRN 322
>08_02_1159 +
24773328-24773994,24775430-24775558,24776080-24776220,
24777393-24777487,24777545-24778606
Length = 697
Score = 29.1 bits (62), Expect = 9.9
Identities = 42/156 (26%), Positives = 59/156 (37%), Gaps = 26/156 (16%)
Query: 16 LSAVLALWSCSEDDDCSSLAGSVCRSGSCACPHGHQSVLG--GSLCATDG-KCFCQEDHH 72
L A+L S CS+ + S + C + G G+ DG +C+C +
Sbjct: 153 LPAMLNWLILSNSSACSASTNASAPSSAPECCSANSFCKGYNGTTADYDGYRCYCSDG-- 210
Query: 73 YFRGRCWPIAEYGATCTRHEECLSVMRDPFSLRCDGTCVCATGYYSRQRGECRKIAAAVG 132
+ G P + G C +EC S P C G C G Y Q K A++
Sbjct: 211 -YEGN--PYVDGG--CRDIDECKS----PHIYPCYGDCKNTRGGYDCQCHHGYKGNASIL 261
Query: 133 EGCVLDEDCQFP------GGACNVNT-----FRCYD 157
GC +C P GG C +NT RC+D
Sbjct: 262 NGCQDINECAEPEKYSCYGGLC-INTPGAFVCRCHD 296
>04_04_1002 -
30025914-30026021,30026116-30026297,30026626-30026908,
30026992-30027630
Length = 403
Score = 29.1 bits (62), Expect = 9.9
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 24 SCSEDDDC--SSLAGSVCRSGSCACPHGHQSVLGGSLCA--TDGKCF 66
+CS + DC +S+AGSVC+ G G GGS A +DG F
Sbjct: 118 NCSANGDCGVTSVAGSVCKCGKVMEYIGEWPQDGGSTAAAGSDGGVF 164
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.324 0.139 0.482
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,689,293
Number of Sequences: 37544
Number of extensions: 919597
Number of successful extensions: 2222
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2217
Number of HSP's gapped (non-prelim): 21
length of query: 565
length of database: 14,793,348
effective HSP length: 86
effective length of query: 479
effective length of database: 11,564,564
effective search space: 5539426156
effective search space used: 5539426156
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 62 (29.1 bits)
- SilkBase 1999-2023 -