Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001746-TA|BGIBMGA001746-PA|IPR013032|EGF-like region,
IPR006149|Nematode-specific EB region, IPR009030|Growth factor,
receptor
(565 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g42620.1 68418.m05188 expressed protein 34 0.22
At2g34940.1 68415.m04289 vacuolar sorting receptor, putative sim... 32 0.88
At1g78850.1 68414.m09191 curculin-like (mannose-binding) lectin ... 31 2.7
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam... 30 3.6
At1g30790.1 68414.m03764 F-box family protein contains Pfam PF00... 30 3.6
At3g49340.1 68416.m05394 cysteine proteinase, putative contains ... 30 4.7
At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nea... 30 4.7
At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nea... 30 4.7
At1g61370.1 68414.m06916 S-locus lectin protein kinase family pr... 29 8.2
>At5g42620.1 68418.m05188 expressed protein
Length = 841
Score = 34.3 bits (75), Expect = 0.22
Identities = 29/121 (23%), Positives = 45/121 (37%), Gaps = 16/121 (13%)
Query: 41 SGSCACPHGHQSVLGGSLCATDGKC--FCQEDHHYFRGRCWPIAEYGATCTRHEECLSVM 98
+G CP H+ + S+ + G+C C + G+C + Y R+ C +
Sbjct: 580 NGELICPAYHE-LCSTSVVSVLGQCPNSCNFNGDCVDGKCRCLLGYHGHDCRNRSCPNNC 638
Query: 99 RDPFSLRCDGTCVCATGYYSRQRGECRKIAAAVGEGCVLDEDCQFPGGACN--VNTFRCY 156
G C+C G+ +C + DE C GG C+ V FRC
Sbjct: 639 NGHGKCTTQGVCICENGFTGI---DCST--------AICDEQCSLHGGVCDNGVCEFRCS 687
Query: 157 D 157
D
Sbjct: 688 D 688
Score = 33.9 bits (74), Expect = 0.29
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 472 SACNVTAQCTQALGNEGVCLDGACACVEGFH-H--RGGRCWPITGLFEVCNRDSQCFLGD 528
S +V QC + G C+DG C C+ G+H H R C C C +
Sbjct: 595 SVVSVLGQCPNSCNFNGDCVDGKCRCLLGYHGHDCRNRSCPNNCNGHGKCTTQGVCICEN 654
Query: 529 LTERVVCRNSLC--QC 542
+ C ++C QC
Sbjct: 655 GFTGIDCSTAICDEQC 670
>At2g34940.1 68415.m04289 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222
Length = 618
Score = 32.3 bits (70), Expect = 0.88
Identities = 41/151 (27%), Positives = 62/151 (41%), Gaps = 34/151 (22%)
Query: 432 SDCVIPNTACFEIDNSMTCQCKERFVAYDDECWPNVDGFQ------SACNV--TAQCTQA 483
++C+I N C++ S CK+ F EC P VDG Q ++C A+C+
Sbjct: 414 NECLIENGGCWQDKRSNVTACKDTFRGRVCEC-PVVDGVQYKGDGYTSCKPYGPARCSMN 472
Query: 484 LGN------EGV----CLD---GACACVEGFHHRGGRCWPITGLFEVCNRDSQCFLGDLT 530
G+ +G+ C D C C GF G +C I + C S C
Sbjct: 473 NGDCWSETRKGLTFSSCSDSETSGCRCPLGFLGDGLKCEDI----DECKEKSAC----KC 524
Query: 531 ERVVCRNSL----CQCDFSYPYSEELHTCSE 557
+ C+N+ C+C + Y +E TC E
Sbjct: 525 DGCKCKNNWGGYECKCSNNSIYMKEEDTCIE 555
>At1g78850.1 68414.m09191 curculin-like (mannose-binding) lectin
family protein low similarity to ser/thr protein kinase
from Zea mays [GI:2598067]; contains Pfam lectin
(probable mannose binding) domain PF01453
Length = 441
Score = 30.7 bits (66), Expect = 2.7
Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 11/103 (10%)
Query: 25 CSEDDDCSSLAGSVCRSGSC-ACPHGHQSVLG-GSLCATDGKCFCQ-EDHHYFRGRCWPI 81
C + C L +C+ G C ACP + +LG C + C + HYF+ I
Sbjct: 315 CRIPEHC--LGFGLCKKGQCNACP-SDKGLLGWDETCKSPSLASCDPKTFHYFK-----I 366
Query: 82 AEYGATCTRHEECLSVMRDPFSLRCDGTCVCATGYYSRQRGEC 124
+ T++ S +C C C +Y+R+ C
Sbjct: 367 EGADSFMTKYNGGSSTTESACGDKCTRDCKCLGFFYNRKSSRC 409
>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 883
Score = 30.3 bits (65), Expect = 3.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 217 FSSCVCPVGYYGNEAGTLCLAELGSPSTSEQCVGLLAEVRDGVCTC 262
+ + +C + G++ G + L +L S CVGL EV +G C
Sbjct: 501 YENIICTECHQGDDDGLMLLCDLCDSSAHTYCVGLGREVPEGNWYC 546
>At1g30790.1 68414.m03764 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 399
Score = 30.3 bits (65), Expect = 3.6
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 305 QQPWQLRSCECIPELAVWDADRNICRFFAGIGETCEV--DSDCLAG 348
+Q W ++CE IP L+VWD+ N F GI + E+ CL+G
Sbjct: 298 KQEWSKQTCE-IP-LSVWDSVENFNMSFPGINKFGEIILAPTCLSG 341
>At3g49340.1 68416.m05394 cysteine proteinase, putative contains
PS00640: Eukaryotic thiol (cysteine) proteases
asparagine active site; similar to cysteine proteinase
GI:535454 from [Alnus glutinosam]
Length = 341
Score = 29.9 bits (64), Expect = 4.7
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 314 ECIPELAVWDADRNICRFFAGIGETCEVDSDCLAGELEIQCVKDEAGQGYCTCPEDLIAV 373
E + ++ D+ + + +GET E D + E + VK + G C + AV
Sbjct: 103 EGMTRISTTDSHETVSFRYENVGETGE-SMDWIQ-EGAVTSVKHQQQCGCCWAFSAVAAV 160
Query: 374 DGLC-VTSGLVLGEACQVSLECSGTENAVCTDGV 406
+G+ + +G ++ + Q L+CS TEN C G+
Sbjct: 161 EGMTKIANGELVSLSEQQLLDCS-TENNGCGGGI 193
>At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 29.9 bits (64), Expect = 4.7
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 8/112 (7%)
Query: 398 ENAVCTDGVCSCNTGYQQVDDFCAPVIGGTCSVDS-DCVIPNTACFEIDNSMTCQCKERF 456
E + +CS G+++ + P I + V+S +C+ N C++ ++ CK+ F
Sbjct: 389 EKSAVLKALCS---GFEETTE---PAICLSTDVESNECLDNNGGCWQDKSANITACKDTF 442
Query: 457 VAYDDECWPNVDGFQSACNVTAQCTQALGNEGVCLDGACACVEGFHHRGGRC 508
EC P VDG Q + + C + +G C E H C
Sbjct: 443 RGRVCEC-PTVDGVQFKGDGYSHCEPSGPGRCTINNGGCWHEERDGHAFSAC 493
>At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 29.9 bits (64), Expect = 4.7
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 8/112 (7%)
Query: 398 ENAVCTDGVCSCNTGYQQVDDFCAPVIGGTCSVDS-DCVIPNTACFEIDNSMTCQCKERF 456
E + +CS G+++ + P I + V+S +C+ N C++ ++ CK+ F
Sbjct: 389 EKSAVLKALCS---GFEETTE---PAICLSTDVESNECLDNNGGCWQDKSANITACKDTF 442
Query: 457 VAYDDECWPNVDGFQSACNVTAQCTQALGNEGVCLDGACACVEGFHHRGGRC 508
EC P VDG Q + + C + +G C E H C
Sbjct: 443 RGRVCEC-PTVDGVQFKGDGYSHCEPSGPGRCTINNGGCWHEERDGHAFSAC 493
>At1g61370.1 68414.m06916 S-locus lectin protein kinase family
protein contains Pfam domains, PF00954: S-locus
glycoprotein family, PF00069: Protein kinase domain, and
PF01453: Lectin (probable mannose binding)
Length = 814
Score = 29.1 bits (62), Expect = 8.2
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 410 NTGYQQVDDFCAPVIGGTCSVDSDCVIPNTACFEIDNSMTCQCKERFVAYDDECW 464
N G V D APV +C V + C P C N C+C + FV DE W
Sbjct: 270 NNGSGWVTDLEAPV--SSCDVYNTCG-PFGLCIR-SNPPKCECLKGFVPKSDEEW 320
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.324 0.139 0.482
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,344,616
Number of Sequences: 28952
Number of extensions: 699218
Number of successful extensions: 1462
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1451
Number of HSP's gapped (non-prelim): 16
length of query: 565
length of database: 12,070,560
effective HSP length: 85
effective length of query: 480
effective length of database: 9,609,640
effective search space: 4612627200
effective search space used: 4612627200
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 62 (29.1 bits)
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