GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001745-TA|BGIBMGA001745-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine
         (306 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    29   0.84 
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   3.4  
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    27   4.5  

>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 2/111 (1%)

Query: 106 DPEPVIVRLGDQNIDPTVDDGASPIDVPIRKINKHPEYAPPMVYNDIALLELATDVEFSA 165
           DPE  +    + ++   +DD  S   VPI K N  PE    +   +   LE   ++E  A
Sbjct: 461 DPEAELSAEENDDVSEALDDNISGEAVPISKKNDEPENVEQIDDAEEEDLEHQRELEAEA 520

Query: 166 AIRPACLWTRQDFGDHDKALATGWGVTNTETRE--TAKELQKVSLSLLQNE 214
                  + +Q+     K           E +E   AKEL K+ +S  Q +
Sbjct: 521 GGVAYSEYVKQNSKSAKKTKKRQRDTLTAEEKEEKEAKELSKMMMSNKQRK 571


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 198 ETAKELQKVSLSLLQNEYC 216
           +TAK L ++SLS + N YC
Sbjct: 304 QTAKRLHRISLSKVYNHYC 322


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 4/36 (11%)

Query: 167 IRPACLWTRQDFGDHDKALATG---WGV-TNTETRE 198
           I P  LW   D   H+ ++  G   WG+  N ET E
Sbjct: 231 INPVALWKSSDISSHNVSIKEGKRIWGIQCNLETSE 266


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.135    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,369,787
Number of Sequences: 5004
Number of extensions: 54738
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 96
Number of HSP's gapped (non-prelim): 3
length of query: 306
length of database: 2,362,478
effective HSP length: 72
effective length of query: 234
effective length of database: 2,002,190
effective search space: 468512460
effective search space used: 468512460
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)