GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001745-TA|BGIBMGA001745-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine
         (306 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29590.1 68414.m03618 eukaryotic translation initiation facto...    30   2.2  
At1g22420.1 68414.m02803 hydroxyproline-rich glycoprotein family...    29   3.0  
At3g02810.1 68416.m00273 protein kinase family protein contains ...    29   3.9  
At5g48740.1 68418.m06032 leucine-rich repeat family protein / pr...    29   5.2  
At5g07260.1 68418.m00828 homeobox protein-related contains weak ...    29   5.2  

>At1g29590.1 68414.m03618 eukaryotic translation initiation factor
           4E, putative / eIF-4E, putative / eIF4E, putative / mRNA
           cap-binding protein, putative similar to SP|O23252
           Eukaryotic translation initiation factor 4E (eIF-4E)
           (eIF4E) (mRNA cap-binding protein) (eIF-4F 25 kDa
           subunit) (eIF-4F P26 subunit) {Arabidopsis thaliana};
           contains Pfam profile PF01652: Eukaryotic initiation
           factor 4E
          Length = 285

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 4/84 (4%)

Query: 109 PVIVRLGDQNIDPTVDDGASPIDVPIRKIN--KHPEYAPPMVYNDIALLELATDVEFSAA 166
           PV  R+ DQNIDP      SPI+  +  I      E AP     + A  +  T ++ S  
Sbjct: 52  PVSGRMADQNIDPNTTTSPSPIEKHVSAIKAISGDEKAPSKEKKNYASKKSTTVIQKSHC 111

Query: 167 IRPACLWTRQDFGDHDKALATGWG 190
            + +  WT        K+    WG
Sbjct: 112 FQNS--WTFWFDNPSSKSNQVIWG 133


>At1g22420.1 68414.m02803 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 480

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 117 QNIDPTVDDGASPIDVPIRKINKHPEYAPPMVYNDIALLEL 157
           +N+ P V +   P+D+P  + N  PE  PP+V   + L+ +
Sbjct: 409 ENVPPLVPENL-PLDLPNPQNNLQPENVPPLVPETLPLMSV 448


>At3g02810.1 68416.m00273 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 558

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 140 HPEYAPPMVYNDIALLELATDVEFSAAIRPACLWTRQDFGDHDKALATGWGVTNTETRET 199
           H +  PP++Y D+    +  D +FS  +    L  +   G  DK +A    V  T     
Sbjct: 180 HDKANPPVIYRDLKASNILLDDDFSPKLSDFGL-HKLGPGTGDKMMALSSRVMGTYGYSA 238

Query: 200 AKELQKVSLSLLQNEYCDGI--LEAIRNRR 227
            +  +  +L+L  + Y  G+  LE I  RR
Sbjct: 239 PEYTRGGNLTLKSDVYSFGVVLLELITGRR 268


>At5g48740.1 68418.m06032 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 895

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 3/94 (3%)

Query: 126 GASPIDVPIRKINKHPEYAPPMVYNDIALLELATDVEFSAAIRPACLWTRQDFG-DHDKA 184
           G S +++ +RKI  +P+ +   VY  + +   A+    S A++    +T QD G   D  
Sbjct: 313 GISKLNITLRKIKFNPQVSALEVYEILQIPPEASSTTVS-ALKVIEQFTGQDLGWQDDPC 371

Query: 185 LATGWGVTNTE-TRETAKELQKVSLSLLQNEYCD 217
               W     E  R T+  L K++L  +   + D
Sbjct: 372 TPLPWNHIECEGNRVTSLFLSKINLRSISPTFGD 405


>At5g07260.1 68418.m00828 homeobox protein-related contains weak
           similarity to Homeobox protein FWA (Swiss-Prot:Q9FVI6)
           [Arabidopsis thaliana]
          Length = 541

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 2/76 (2%)

Query: 201 KELQKVSLSLLQNEYCDGILEAIRNRRWQGFAATQMCAGELRGGKDTCQGDSGSPLQVAS 260
           K L  +S S + N +C G+   I  +RW       + A  +R      +G SG P  + S
Sbjct: 321 KNLLNLS-SFMVNVFCSGVC-GITGQRWNRLNTVGVSANNIRMFTQESRGMSGIPCVLVS 378

Query: 261 KDNQCIFHVVGVTSFG 276
                  H      FG
Sbjct: 379 ATGLARMHTKPEVMFG 394


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.135    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,418,694
Number of Sequences: 28952
Number of extensions: 308326
Number of successful extensions: 558
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 555
Number of HSP's gapped (non-prelim): 7
length of query: 306
length of database: 12,070,560
effective HSP length: 81
effective length of query: 225
effective length of database: 9,725,448
effective search space: 2188225800
effective search space used: 2188225800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)