GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001742-TA|BGIBMGA001742-PA|IPR000727|Target SNARE
coiled-coil region, IPR010989|t-snare, IPR006012|Syntaxin/epimorphin
family
         (338 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0504 - 18380773-18381360                                         31   1.8  
05_05_0082 + 22252993-22255617                                         30   2.3  
11_01_0573 - 4580054-4580416                                           29   5.3  

>10_08_0504 - 18380773-18381360
          Length = 195

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 25  VQLDPHDTSDDKIHTMFQEVERMRGWI 51
           +Q+DP  TSDD  H    E+  MRGWI
Sbjct: 145 LQMDPITTSDDHDHHDDDELIDMRGWI 171


>05_05_0082 + 22252993-22255617
          Length = 874

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 160 KLSKDALYTVQRCCNTATQRQVCRQVYTGPLQH-YELTSPNALTAPNLAISDEECQSLLD 218
           K+++    TV + C    Q  + RQ+++  L+H + LT  N +TA  LA +  +C  L D
Sbjct: 299 KMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTG-NVMTA--LADAYSKCGELAD 355

Query: 219 SNNI 222
           + NI
Sbjct: 356 ALNI 359


>11_01_0573 - 4580054-4580416
          Length = 120

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 15 AGAGGVYADTVQLDPHDTSDDKIHTMFQEVERMRGWIRDLD-DNTQLVRRLYSDPNYHTN 73
          +G+G V ADT   D H+  D+  H MF       G + D+D D  Q + R   DP Y  N
Sbjct: 15 SGSGAV-ADTNSADNHEERDEDEHDMFIP-SPFGGEMVDVDPDLLQDMSRDVEDPTY--N 70

Query: 74 RQLQEQLDRAVTQSNAL 90
           +   +  R V+ S  L
Sbjct: 71 ERDFMKFSRLVSDSETL 87


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.133    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,532,295
Number of Sequences: 37544
Number of extensions: 240603
Number of successful extensions: 538
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 537
Number of HSP's gapped (non-prelim): 3
length of query: 338
length of database: 14,793,348
effective HSP length: 82
effective length of query: 256
effective length of database: 11,714,740
effective search space: 2998973440
effective search space used: 2998973440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)