GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001742-TA|BGIBMGA001742-PA|IPR000727|Target SNARE
coiled-coil region, IPR010989|t-snare, IPR006012|Syntaxin/epimorphin
family
         (338 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83230-8|CAC42303.1|  291|Caenorhabditis elegans Hypothetical pr...    31   1.5  
Z83230-7|CAB05747.1|  291|Caenorhabditis elegans Hypothetical pr...    31   1.5  
AF047885-1|AAD10538.1|  291|Caenorhabditis elegans UNC-64 syntax...    31   1.5  
AB008844-1|BAA23586.1|  291|Caenorhabditis elegans syntaxin C pr...    31   1.5  
AB008843-1|BAA23585.1|  291|Caenorhabditis elegans syntaxin B pr...    31   1.5  
AB008842-1|BAA23584.1|  291|Caenorhabditis elegans syntaxin A pr...    31   1.5  
Z81532-8|CAB04327.2|  248|Caenorhabditis elegans Hypothetical pr...    29   6.2  
Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical pr...    28   8.2  
Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-lik...    28   8.2  

>Z83230-8|CAC42303.1|  291|Caenorhabditis elegans Hypothetical
           protein F56A8.7b protein.
          Length = 291

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 29/148 (19%), Positives = 65/148 (43%), Gaps = 8/148 (5%)

Query: 4   RDRLAELQHVSAGAGGVYADTVQLDPHDTSDDKIHTMFQEVERMRGWIRDLDDNTQLVRR 63
           +DRL+ L+  +A +     D + +D  +     +   F++VE +RG +  + +N + V++
Sbjct: 3   KDRLSALK--AAQSEDEQDDDMHMDTGNAQ--YMEEFFEQVEEIRGSVDIIANNVEEVKK 58

Query: 64  LYSD--PNYHTNRQLQEQLDRAVTQSNALGLKVCGALRQFETRVXXXXXXXXXXXTLWRI 121
            +S    N   +++ +E+LD  +        KV G L+  E  +              RI
Sbjct: 59  KHSAILSNPVNDQKTKEELDELMAVIKRAANKVRGKLKLIENAIDHDEQGAGNADL--RI 116

Query: 122 ARLQYAATRRLYGDALDQHRRALDAVRD 149
            + Q++   R + + +  + +     R+
Sbjct: 117 RKTQHSTLSRRFVEVMTDYNKTQTDYRE 144


>Z83230-7|CAB05747.1|  291|Caenorhabditis elegans Hypothetical
           protein F56A8.7a protein.
          Length = 291

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 29/148 (19%), Positives = 65/148 (43%), Gaps = 8/148 (5%)

Query: 4   RDRLAELQHVSAGAGGVYADTVQLDPHDTSDDKIHTMFQEVERMRGWIRDLDDNTQLVRR 63
           +DRL+ L+  +A +     D + +D  +     +   F++VE +RG +  + +N + V++
Sbjct: 3   KDRLSALK--AAQSEDEQDDDMHMDTGNAQ--YMEEFFEQVEEIRGSVDIIANNVEEVKK 58

Query: 64  LYSD--PNYHTNRQLQEQLDRAVTQSNALGLKVCGALRQFETRVXXXXXXXXXXXTLWRI 121
            +S    N   +++ +E+LD  +        KV G L+  E  +              RI
Sbjct: 59  KHSAILSNPVNDQKTKEELDELMAVIKRAANKVRGKLKLIENAIDHDEQGAGNADL--RI 116

Query: 122 ARLQYAATRRLYGDALDQHRRALDAVRD 149
            + Q++   R + + +  + +     R+
Sbjct: 117 RKTQHSTLSRRFVEVMTDYNKTQTDYRE 144


>AF047885-1|AAD10538.1|  291|Caenorhabditis elegans UNC-64 syntaxin
           class B protein.
          Length = 291

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 29/148 (19%), Positives = 65/148 (43%), Gaps = 8/148 (5%)

Query: 4   RDRLAELQHVSAGAGGVYADTVQLDPHDTSDDKIHTMFQEVERMRGWIRDLDDNTQLVRR 63
           +DRL+ L+  +A +     D + +D  +     +   F++VE +RG +  + +N + V++
Sbjct: 3   KDRLSALK--AAQSEDEQDDDMHMDTGNAQ--YMEEFFEQVEEIRGSVDIIANNVEEVKK 58

Query: 64  LYSD--PNYHTNRQLQEQLDRAVTQSNALGLKVCGALRQFETRVXXXXXXXXXXXTLWRI 121
            +S    N   +++ +E+LD  +        KV G L+  E  +              RI
Sbjct: 59  KHSAILSNPVNDQKTKEELDELMAVIKRAANKVRGKLKLIENAIDHDEQGAGNADL--RI 116

Query: 122 ARLQYAATRRLYGDALDQHRRALDAVRD 149
            + Q++   R + + +  + +     R+
Sbjct: 117 RKTQHSTLSRRFVEVMTDYNKTQTDYRE 144


>AB008844-1|BAA23586.1|  291|Caenorhabditis elegans syntaxin C
           protein.
          Length = 291

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 29/148 (19%), Positives = 65/148 (43%), Gaps = 8/148 (5%)

Query: 4   RDRLAELQHVSAGAGGVYADTVQLDPHDTSDDKIHTMFQEVERMRGWIRDLDDNTQLVRR 63
           +DRL+ L+  +A +     D + +D  +     +   F++VE +RG +  + +N + V++
Sbjct: 3   KDRLSALK--AAQSEDEQDDDMHMDTGNAQ--YMEEFFEQVEEIRGSVDIIANNVEEVKK 58

Query: 64  LYSD--PNYHTNRQLQEQLDRAVTQSNALGLKVCGALRQFETRVXXXXXXXXXXXTLWRI 121
            +S    N   +++ +E+LD  +        KV G L+  E  +              RI
Sbjct: 59  KHSAILSNPVNDQKTKEELDELMAVIKRAANKVRGKLKLIENAIDHDEQGAGNADL--RI 116

Query: 122 ARLQYAATRRLYGDALDQHRRALDAVRD 149
            + Q++   R + + +  + +     R+
Sbjct: 117 RKTQHSTLSRRFVEVMTDYNKTQTDYRE 144


>AB008843-1|BAA23585.1|  291|Caenorhabditis elegans syntaxin B
           protein.
          Length = 291

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 29/148 (19%), Positives = 65/148 (43%), Gaps = 8/148 (5%)

Query: 4   RDRLAELQHVSAGAGGVYADTVQLDPHDTSDDKIHTMFQEVERMRGWIRDLDDNTQLVRR 63
           +DRL+ L+  +A +     D + +D  +     +   F++VE +RG +  + +N + V++
Sbjct: 3   KDRLSALK--AAQSEDEQDDDMHMDTGNAQ--YMEEFFEQVEEIRGSVDIIANNVEEVKK 58

Query: 64  LYSD--PNYHTNRQLQEQLDRAVTQSNALGLKVCGALRQFETRVXXXXXXXXXXXTLWRI 121
            +S    N   +++ +E+LD  +        KV G L+  E  +              RI
Sbjct: 59  KHSAILSNPVNDQKTKEELDELMAVIKRAANKVRGKLKLIENAIDHDEQGAGNADL--RI 116

Query: 122 ARLQYAATRRLYGDALDQHRRALDAVRD 149
            + Q++   R + + +  + +     R+
Sbjct: 117 RKTQHSTLSRRFVEVMTDYNKTQTDYRE 144


>AB008842-1|BAA23584.1|  291|Caenorhabditis elegans syntaxin A
           protein.
          Length = 291

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 29/148 (19%), Positives = 65/148 (43%), Gaps = 8/148 (5%)

Query: 4   RDRLAELQHVSAGAGGVYADTVQLDPHDTSDDKIHTMFQEVERMRGWIRDLDDNTQLVRR 63
           +DRL+ L+  +A +     D + +D  +     +   F++VE +RG +  + +N + V++
Sbjct: 3   KDRLSALK--AAQSEDEQDDDMHMDTGNAQ--YMEEFFEQVEEIRGSVDIIANNVEEVKK 58

Query: 64  LYSD--PNYHTNRQLQEQLDRAVTQSNALGLKVCGALRQFETRVXXXXXXXXXXXTLWRI 121
            +S    N   +++ +E+LD  +        KV G L+  E  +              RI
Sbjct: 59  KHSAILSNPVNDQKTKEELDELMAVIKRAANKVRGKLKLIENAIDHDEQGAGNADL--RI 116

Query: 122 ARLQYAATRRLYGDALDQHRRALDAVRD 149
            + Q++   R + + +  + +     R+
Sbjct: 117 RKTQHSTLSRRFVEVMTDYNKTQTDYRE 144


>Z81532-8|CAB04327.2|  248|Caenorhabditis elegans Hypothetical
           protein F36F2.4 protein.
          Length = 248

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/46 (30%), Positives = 22/46 (47%)

Query: 276 DQIDSVEYYALQATEHVECGGQQLLKGTVTRTKARKVRSPFSCLFI 321
           D +DS+E     A  +VE G Q + +      KAR+ +    C F+
Sbjct: 189 DMVDSIEANVEHAQIYVEQGAQNVQQAVYYNQKARQKKLLLLCFFV 234


>Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical protein
            F01G4.1 protein.
          Length = 1474

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 27   LDPHDTSDD--KIHTMFQEVERMRGWIRDLDDNTQLVRRLYSDPNYHTNRQLQEQLDRAV 84
            L+ H+  DD  K+   ++E+ER R   R++ D T   RR   + +Y ++    EQ  + V
Sbjct: 1075 LEEHEIPDDILKLSFDYEEMERAREEGREVVDQTPNQRRRRREVDYSSDLLSDEQFMKQV 1134

Query: 85   TQ 86
             +
Sbjct: 1135 EE 1136


>Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical protein
            F01G4.1 protein.
          Length = 1474

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 27   LDPHDTSDD--KIHTMFQEVERMRGWIRDLDDNTQLVRRLYSDPNYHTNRQLQEQLDRAV 84
            L+ H+  DD  K+   ++E+ER R   R++ D T   RR   + +Y ++    EQ  + V
Sbjct: 1075 LEEHEIPDDILKLSFDYEEMERAREEGREVVDQTPNQRRRRREVDYSSDLLSDEQFMKQV 1134

Query: 85   TQ 86
             +
Sbjct: 1135 EE 1136


>AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-like
            protein protein.
          Length = 1474

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 27   LDPHDTSDD--KIHTMFQEVERMRGWIRDLDDNTQLVRRLYSDPNYHTNRQLQEQLDRAV 84
            L+ H+  DD  K+   ++E+ER R   R++ D T   RR   + +Y ++    EQ  + V
Sbjct: 1075 LEEHEIPDDILKLSFDYEEMERAREEGREVVDQTPNQRRRRREVDYSSDLLSDEQFMKQV 1134

Query: 85   TQ 86
             +
Sbjct: 1135 EE 1136


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.133    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,397,823
Number of Sequences: 27539
Number of extensions: 210191
Number of successful extensions: 625
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 618
Number of HSP's gapped (non-prelim): 16
length of query: 338
length of database: 12,573,161
effective HSP length: 82
effective length of query: 256
effective length of database: 10,314,963
effective search space: 2640630528
effective search space used: 2640630528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)