Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001741-TA|BGIBMGA001741-PA|IPR007087|Zinc finger,
C2H2-type
(320 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 61 2e-10
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 43 5e-05
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 40 5e-04
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 38 0.001
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 37 0.004
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 37 0.004
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 36 0.006
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 36 0.008
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 33 0.071
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 31 0.22
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 30 0.38
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 30 0.38
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 28 1.5
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 27 3.5
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 27 3.5
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss... 27 4.7
SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar... 27 4.7
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 26 6.2
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 26 6.2
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 26 6.2
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|... 26 8.2
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 26 8.2
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 60.9 bits (141), Expect = 2e-10
Identities = 42/122 (34%), Positives = 57/122 (46%), Gaps = 9/122 (7%)
Query: 173 CMCEICGQMFRCMSLLKDHYDAH-NSSSFECG--ECGKRFPRRSRLVIHERVHATRPLHS 229
C E CG+ + SLL+ H H N F C C K F R+S L IH+R H S
Sbjct: 25 CPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFS 84
Query: 230 CAI--CGRRFTVYANMIRHRDSVHMNLKKFDCNL--CGKKFKQLCGLRTHID-CYHHKQP 284
C C +F ++ RH + VH K + C C + F + LR+HI C+ H P
Sbjct: 85 CHYDGCDAQFYTQQHLERHIE-VHRKPKPYACTWEGCDECFSKHQQLRSHISACHTHLLP 143
Query: 285 WP 286
+P
Sbjct: 144 YP 145
Score = 50.4 bits (115), Expect = 3e-07
Identities = 56/260 (21%), Positives = 98/260 (37%), Gaps = 31/260 (11%)
Query: 34 HLRT-KHPSDIVCAL--CGHSFVSKKGLVLHTNFKHKFHSKTVPKDGPACEECNIVFVSG 90
HLRT + VC C +F K L +H + DG C+ F +
Sbjct: 43 HLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDG-----CDAQFYTQ 97
Query: 91 HALDTHMSLSTKHN------KSLDTSIRRRVHKKASDHKRPAHHKPPEGPIPCEQCDMEL 144
L+ H+ + K + D + H++ H H P + C++
Sbjct: 98 QHLERHIEVHRKPKPYACTWEGCDECFSK--HQQLRSHISACHTHLLPYPCTYQDCELRF 155
Query: 145 PNARRYDRHFRKLHPGKNRTKFFTEDSQCMCEICGQMFRCMSLLKDHY-DAHNSSSFECG 203
++ H + H + + C+ + F S L++H +AH S C
Sbjct: 156 ATKQKLQNHVNRAH--EKIISYSCPHESCVGH---EGFEKWSQLQNHIREAHVPS---CS 207
Query: 204 ECGKRFPR----RSRLVIHERVHATRPLHSCAI--CGRRFTVYANMIRHRDSVHMNLKKF 257
CG++F R +V+H+ R + C + C + FT + + +H +H F
Sbjct: 208 ICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNMAF 267
Query: 258 DCNLCGKKFKQLCGLRTHID 277
C+ CG KF L+ H++
Sbjct: 268 HCDSCGTKFGYKHMLQRHLE 287
Score = 31.9 bits (69), Expect = 0.12
Identities = 46/244 (18%), Positives = 88/244 (36%), Gaps = 31/244 (12%)
Query: 48 CGHSFVSKKGLVLHTNFKH-KFHSKTVPKDGPACEECNIVF--VSGHALDTHMSLSTKHN 104
C F +K+ L H N H K S + P + E + + H + H+ +
Sbjct: 151 CELRFATKQKLQNHVNRAHEKIISYSCPHESCVGHEGFEKWSQLQNHIREAHVPSCSICG 210
Query: 105 KSLDTSIRRRVH---KKASDHKRPAHHKPPEGPIPCEQCDMELPNARRYDRHFRKLHPGK 161
+ T+ R H + + +R +H P EG C + +H +H G
Sbjct: 211 RQFKTAAHLRHHVVLHQTTLEERKTYHCPMEG------CKKSFTRSSALKKHISVIHEG- 263
Query: 162 NRTKFFTEDSQCMCEICGQMFRCMSLLKDHYDAHNSSSFE---CGECGKRFPRRSRLVIH 218
+ C+ CG F +L+ H + ECG + + IH
Sbjct: 264 --------NMAFHCDSCGTKFGYKHMLQRHLERGTCKKAHKPYINECGIKHDGIEGVAIH 315
Query: 219 ERVHATRPLHSCAICGRRFTVYANMIRHRDSVHMNLKKFDCNL--CGKKFKQLCGLRTHI 276
++ + L S + + + H + +++ C+ C +FK+L + H+
Sbjct: 316 DQKE--KELSSNLVSDVAKKIINEVTGHG---YKEAREYSCSFPECNYRFKRLYDMHRHL 370
Query: 277 DCYH 280
+ +H
Sbjct: 371 NSHH 374
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 43.2 bits (97), Expect = 5e-05
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 173 CMCEICGQMFRCMSLLKDHYDAH-NSSSFECGECGKRFPRRSRLVIHERVHATRPLHSCA 231
C C + F LK H + H N F+C C K F R+ HE++H +C
Sbjct: 572 CTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLHTGIKAFACV 631
Query: 232 ICGRRFTVYANMIRHRDS 249
C +RF + RH S
Sbjct: 632 TCNQRFARMDALNRHYKS 649
Score = 34.3 bits (75), Expect = 0.023
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 233 CGRRFTVYANMIRHRDSVHMNLKKFDCNLCGKKFKQLCGLRTH 275
C +RFT N+ H ++ H N + F C++C K F + R H
Sbjct: 577 CNKRFTRAYNLKSHMNT-HTNYRPFQCSICKKSFARQHDKRRH 618
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 39.9 bits (89), Expect = 5e-04
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 199 SFECGECGKRFPRRSRLVIHER-VHATRPLHSCAICGRRFTVYANMIRHRDSVHMN 253
SF C EC K+F R L H R +H + C ICG+RF+ N+ +H + +H+N
Sbjct: 422 SFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDNLRQH-ERLHVN 475
Score = 37.9 bits (84), Expect = 0.002
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 108 DTSIRRRVHKKASDHKRPAHHKPPEGPIPCEQCDMELPNARRYDRHFRKLHPGKNRTKFF 167
D S++RR ++ S+ K P C +C + + RH R LH
Sbjct: 396 DGSMKRRKRRQPSNRKTSVPRSPGGKSFVCPECSKKFKRSEHLRRHIRSLH--------- 446
Query: 168 TEDSQCMCEICGQMFRCMSLLKDHYDAHNSSS 199
T + +C ICG+ F L+ H H ++S
Sbjct: 447 TSEKPFVC-ICGKRFSRRDNLRQHERLHVNAS 477
Score = 37.1 bits (82), Expect = 0.003
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 230 CAICGRRFTVYANMIRHRDSVHMNLKKFDCNLCGKKFKQLCGLRTH 275
C C ++F ++ RH S+H + K F C +CGK+F + LR H
Sbjct: 425 CPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDNLRQH 469
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 255 KKFDCNLCGKKFKQLCGLRTHIDCYH 280
K F C C KKFK+ LR HI H
Sbjct: 421 KSFVCPECSKKFKRSEHLRRHIRSLH 446
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 38.3 bits (85), Expect = 0.001
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 204 ECGKRFPRRSRLVIHERVHATRPLHSCAICGRRFTVYANMIRHRDSVHM 252
+C K F R+ L HER H SC+ C R F + RH +H+
Sbjct: 32 DCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMHL 80
Score = 36.3 bits (80), Expect = 0.006
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 233 CGRRFTVYANMIRHRDSVHMNLKKFDCNLCGKKFKQLCGLRTHIDCYH-HKQPWPKRNRK 291
C + FT ++ RH + H N+K F C+ C + F + L H+ H KQ +R
Sbjct: 33 CPKSFTRKEHLRRH-ERTHENVKAFSCSFCNRAFARSDVLNRHVQQMHLQKQNLSERRML 91
Query: 292 KAS 294
AS
Sbjct: 92 NAS 94
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 36.7 bits (81), Expect = 0.004
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 230 CAICGRRFTVYANMIRHRDSVHMNLKKFDCNLCGKKFKQLCGLRTHIDCYHH 281
C C +RFT + N+ RH+ + H + C C K K+ L+ HI +H+
Sbjct: 33 CDQCAKRFTRHENLTRHK-ACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFHN 83
Score = 31.1 bits (67), Expect = 0.22
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 200 FECGECGKRFPRRSRLVIHERVHATRPLHSCAIC 233
F C +C KRF R L H+ H+ C C
Sbjct: 31 FPCDQCAKRFTRHENLTRHKACHSKAEPIPCPYC 64
Score = 30.7 bits (66), Expect = 0.29
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 116 HKKASDHKRPAHHKPPEGPIPCEQCDMELPNARRYDRHFRKLHPGKNRTKFFTEDSQCMC 175
H+ + HK A H E PIPC C+++ RH ++ H K+ + ++D +
Sbjct: 43 HENLTRHK--ACHSKAE-PIPCPYCEIKCKRKDLLKRHIQRFHNDKSVIEEGSKDVLDVK 99
Query: 176 EICGQMFRCMSLLKDHYDA 194
Q M ++ +DA
Sbjct: 100 AAASQQEDNMKIVLPSFDA 118
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 257 FDCNLCGKKFKQLCGLRTHIDCYHHKQPWP 286
F C+ C K+F + L H C+ +P P
Sbjct: 31 FPCDQCAKRFTRHENLTRHKACHSKAEPIP 60
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 36.7 bits (81), Expect = 0.004
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 172 QCMCEICGQMFRCMSLLKDHYDAH-NSSSFECGE-------CGKRFPRRSRLVIH-ERVH 222
Q +CE C + F + LK H +H N F C E CG++F RR L+ H +++H
Sbjct: 69 QYVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQKIH 128
Score = 35.5 bits (78), Expect = 0.010
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 230 CAICGRRFTVYANMIRHRDSVHMNLKKFDCNL-------CGKKFKQLCGLRTHIDCYHHK 282
C C R F ++ RH S H N K F C+ CG++F + L H H +
Sbjct: 72 CETCTRAFARLEHLKRHIRS-HTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQKIH-R 129
Query: 283 QPWPKRNRKKASNNPTP-VTSASIDNDTWEPKKV 315
P P+R R+ + P P +++ S+ K V
Sbjct: 130 NPQPRRRRRSTTALPNPSLSNVSVSTTNLASKPV 163
Score = 32.3 bits (70), Expect = 0.094
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 200 FECGECGKRFPRRSRLVIHERVHATRPLHSCAI-------CGRRFTVYANMIRHRDSVHM 252
+ C C + F R L H R H +C+ CGR+F+ ++RH+ +H
Sbjct: 70 YVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQKIHR 129
Query: 253 N 253
N
Sbjct: 130 N 130
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 36.3 bits (80), Expect = 0.006
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 200 FECGECGKRFPRRSRLVIHERVHATRPLHSC--AICGRRFTVYANMIRHR 247
+ C EC + F R S L IH H C A CG+ F V +NM RH+
Sbjct: 468 YRCTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRHQ 517
Score = 33.5 bits (73), Expect = 0.041
Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 7/130 (5%)
Query: 98 SLSTKHNKSLDTSIRRRVHKKASDHKRPAHHKPPEGPIPCEQCDMELPNARRYD--RHFR 155
SL+ K N S + S+ + ++ P + D +RR+ R
Sbjct: 393 SLNFKDNMSAELSVVATLASNSAQ-AHPMGQQSDSNYSDHHNNDKRAHVSRRHSTSRKIA 451
Query: 156 KLHPGKNRTKFFTEDSQCMCEICGQMFRCMSLLKDHYDAHNSSS-FEC--GECGKRFPRR 212
+ H G + T + + C C Q F S LK H +H F C CGK F R
Sbjct: 452 QSHTGSSSTSS-AANVRYRCTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVR 510
Query: 213 SRLVIHERVH 222
S + H+R+H
Sbjct: 511 SNMRRHQRIH 520
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 35.9 bits (79), Expect = 0.008
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 175 CEICGQMFRCMSLLKDHYDAHNSSS-FECG--ECGKRFPRRSRLVIHERVHATRPL 227
C C ++F H +H FEC C KRF RR L+ H R H + L
Sbjct: 6 CPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTHLRKAL 61
Score = 33.5 bits (73), Expect = 0.041
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 199 SFECGECGKRFPRRSRLVIHERVHATRPLHSCAI--CGRRFTVYANMIRH 246
S+EC C + F R+ V H R H C+ C +RFT +IRH
Sbjct: 3 SYECPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRH 52
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 32.7 bits (71), Expect = 0.071
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 205 CGKRFPRRSRLVIHE-RVHA-TRPLHSCAICG--RRFTVYANMIRH 246
C F R L+ H+ +HA TRP+ C ICG R F+ + ++RH
Sbjct: 585 CNTVFSRTYDLIRHQDTIHAKTRPVFRCEICGDQRHFSRHDALVRH 630
Score = 31.5 bits (68), Expect = 0.16
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 232 ICGRRFTVYANMIRHRDSVHMNLKK-FDCNLCG--KKFKQLCGLRTHIDCYH 280
IC F+ ++IRH+D++H + F C +CG + F + L H+ H
Sbjct: 584 ICNTVFSRTYDLIRHQDTIHAKTRPVFRCEICGDQRHFSRHDALVRHLRVKH 635
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 31.1 bits (67), Expect = 0.22
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 200 FECGECGKRFPRRSRLVIHERVHATRPLHSCAI--CGRRFTVYANMIRHRDSVHMN 253
++C C K F R H R H H C C +RF+ + RH +H N
Sbjct: 26 YKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHA-RIHTN 80
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 175 CEICGQMFRCMSLLKDHYDAHNSSS-FECG--ECGKRFPRRSRLVIHERVH 222
C +C + F + H H C C KRF R L H R+H
Sbjct: 28 CPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARIH 78
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 30.3 bits (65), Expect = 0.38
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 231 AICGRRFTVYANMIRHRDSVHMNLKKFDCNLCGKKFKQLCGLRTHIDCYH--HKQPWPKR 288
AI R+ +V+ + H+ H + C LCG+ K G++ IDC++ HK+ +PK
Sbjct: 392 AIRQRKESVH-EVYGHKFLQHQFYQIMRCALCGEFLKNAAGMQC-IDCHYTCHKKCYPKV 449
Query: 289 NRKKASNNPTPVTS 302
K S + +S
Sbjct: 450 VTKCISKSSDSASS 463
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 30.3 bits (65), Expect = 0.38
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 233 CGRRFTVYANMIRHRDSVHMNLKKFDCNLCGKKFKQLCGLRTHIDCYHHKQ 283
C + FT + RH S H N K F C C F + L H++ H KQ
Sbjct: 24 CTKSFTRKEHARRHFRS-HTNSKAFICPHCSSSFTRSDVLNRHVNQKHVKQ 73
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/48 (29%), Positives = 18/48 (37%)
Query: 205 CGKRFPRRSRLVIHERVHATRPLHSCAICGRRFTVYANMIRHRDSVHM 252
C K F R+ H R H C C FT + RH + H+
Sbjct: 24 CTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHVNQKHV 71
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 244 IRHRDSVHMNLKKFDCNLCGKKFKQLCGLRTH 275
I H+ V N K + C +C K++K L GL+ H
Sbjct: 387 IPHQGFVVEN-KPYRCEVCSKRYKNLNGLKYH 417
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 27.1 bits (57), Expect = 3.5
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 80 CEECNIVFVSGHALDTHMSLSTKHNKSLDTSIRR-RVHKKASD 121
CE CN F S A +HM+ S KH +L R R+ K S+
Sbjct: 72 CEVCNKKFYSEGAYSSHMA-SKKHRDNLSKFQRNSRIKKLQSE 113
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 50 HSFVSKKGLVLHTNFKHKFHSKTVP--KDGPACEECNIVFVSGHALDTH 96
H+ SKKGL H + + K P CE CN F L H
Sbjct: 215 HTLFSKKGLTKHNEVGDQGSDLEITGFKGHPKCEFCNTHFYDDDELFKH 263
>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 26.6 bits (56), Expect = 4.7
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Query: 134 PIPCEQCDMELPNARRYDRHFRKLHPGKNRTK--FFTEDSQCMCEICGQMFRCMSLLKDH 191
PI C C + L + R + L P KN ++ + C C F +
Sbjct: 322 PIECPSCSLVLILSTHLARSYHHLFPLKNWSEIPWSANPKSTHCFACQLPFP-KPPVSPF 380
Query: 192 YDAHNSSSFECGECGKRFPRRSRLVIHERVH 222
++ +S + C C F + HE++H
Sbjct: 381 DESTSSMRYACPSCKNHFCLDCDVFAHEQLH 411
>SPBC1604.16c |||RNA-binding protein, G-patch type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 199
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 121 DHKRPAHHKPPEGPIPCEQCDMELPNARRYDRHFRKL 157
D+ + K E CE C + +PN+++ + HF+ +
Sbjct: 57 DNSHTMNSKRDEAGFACEVCQIYIPNSKKIN-HFKSM 92
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 254 LKKFDCNLCGKKFKQLCGLRTHIDCYHHKQPWPKRNRKKASNN 296
+K +C +CG + L L H+D H R+ + N+
Sbjct: 36 VKATECPICGLELPNLSALNDHLDVTHFNDNEKIHKRQDSINS 78
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 168 TEDSQCMCEICGQMFR-CMSLLKDH-----YDAHNSSSFECGECGKR 208
T D + +C C C +KD+ YD+++ F C +C K+
Sbjct: 64 TSDGRPVCSSCAHTCTACRMRIKDYALMSGYDSYHRECFRCHDCRKQ 110
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 233 CGRRFTVYANMIRHRDSVHMNLKKFDCNLCGKKFKQLCGLRTHIDCYHHKQPW 285
C +R N+ H + H++ + + C+LC F + L+ H+ + + +P+
Sbjct: 450 CNKRIARKYNVESHIQT-HLSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPY 501
Score = 26.2 bits (55), Expect = 6.2
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 170 DSQCMCEICGQMFRCMSLLKDHYDAH-NSSSFECGECGKRFPRRSRLVIHER 220
D C++C F LK H H N + C EC KRF R L H++
Sbjct: 470 DRPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVC-ECLKRFNRLDALNRHKQ 520
>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 362
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 242 NMIRHRDSVHMNLKKFDCNLCGKKFKQLC 270
N + R S +N +K C LC + KQ+C
Sbjct: 272 NKLYGRHSKSINPQKQVCRLCKSQIKQIC 300
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 82 ECNIVFVSGHALDTHMSLSTKHNKSLDTSIRRRVHKKASDHKRPAHHKPPE 132
+ N++F + LD + ++ + H K + + RR+ K+S + + PPE
Sbjct: 7 DSNLLFTAMFDLDKNTNIESNHVKIGNKNTTRRLIIKSSKNSVRIAYAPPE 57
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.323 0.134 0.441
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,609,331
Number of Sequences: 5004
Number of extensions: 70226
Number of successful extensions: 404
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 345
Number of HSP's gapped (non-prelim): 57
length of query: 320
length of database: 2,362,478
effective HSP length: 73
effective length of query: 247
effective length of database: 1,997,186
effective search space: 493304942
effective search space used: 493304942
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)
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