Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001740-TA|BGIBMGA001740-PA|IPR005479|Carbamoyl-phosphate
synthase L chain, ATP-binding
         (222 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    27   0.14 
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    25   0.57 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        24   1.3  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    22   4.0  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    22   4.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   7.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.2  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   9.2  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 63  ESRNLNSNLCTKLYKAN-HSDVCIQCDENDKNEIQEIILEEAINIKANDSDVDDIKYDNN 121
           +S   NS+    L+K N   +  I    +D  + QE+ +E   N    DSD++  K   N
Sbjct: 146 KSNGSNSSNSDVLFKQNKEEEQTINRKNSDYLDNQEVSMENTENKSCTDSDIEKYKMFCN 205

Query: 122 MK 123
           ++
Sbjct: 206 LE 207


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 3/102 (2%)

Query: 83  VCIQCDENDKNEIQEIILEEAINIKANDSDVDDIKYDNNMKTNDSEDDDFNETNTDVMMM 142
           V +QCD +++N+I ++I     N+ A D  +++   + ++   + E  D+ +   D+ ++
Sbjct: 59  VPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKI-FDINLL 117

Query: 143 EDTACDNQVEILELNVKSAKRKLLRRDIKTKEAVNLKSSNDN 184
             T C  Q E+L+L  K      +  +I     +NL   N N
Sbjct: 118 GLT-CMIQ-EVLKLMKKKGINNGIIVNINDASGLNLLPMNRN 157


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 84  CIQCDENDKNEIQEIILEEAINIKANDSDVDDIKYD 119
           C+Q  E   NE+   +   A+N  AND    D+  D
Sbjct: 345 CLQFREYLNNELGPAVKRIALNNNANDRLTVDVSVD 380


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 173 KEAVNLKSSNDNGKIANEDYIDLSLFDIKYLSQEEQRCQG 212
           ++ V+  +  D   +A + YID +L  +K+L  E ++  G
Sbjct: 97  EQCVSKAADEDECMVARK-YIDCALEKMKFLDDELEKIAG 135


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 173 KEAVNLKSSNDNGKIANEDYIDLSLFDIKYLSQEEQRCQG 212
           ++ V+  +  D   +A + YID +L  +K+L  E ++  G
Sbjct: 97  EQCVSKAADEDECMVARK-YIDCALEKMKFLDDELEKIAG 135


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 115 DIKYDNNMKTNDSEDDDF--NETNTDVMMMEDTACDNQVEILELNVKSAKR----KLLRR 168
           +I+ DN+ + ND ++++F  +    D+   E+    N     E   +  K     K+LR 
Sbjct: 79  EIESDNSKEVNDKKEENFIVDRLRNDLFECENKEKSNVCLKFEEQKRRKKSLDDVKILRN 138

Query: 169 DIKTKEAVNLK 179
           D       NLK
Sbjct: 139 DRIDSYKSNLK 149


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/51 (17%), Positives = 21/51 (41%)

Query: 134 ETNTDVMMMEDTACDNQVEILELNVKSAKRKLLRRDIKTKEAVNLKSSNDN 184
           E      +  DT  +N+       +  AK+K  +R +   + ++++    N
Sbjct: 63  ELGASTKLATDTTSENEENYPHYQMSGAKQKKKKRSLMGAQGLSIRGLQIN 113


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/28 (28%), Positives = 16/28 (57%)

Query: 109 NDSDVDDIKYDNNMKTNDSEDDDFNETN 136
           N++  D+I+  NN   N+ +++  N  N
Sbjct: 416 NNNQNDNIQNTNNQNDNNQKNNKKNANN 443


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.130    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,509
Number of Sequences: 429
Number of extensions: 2919
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 222
length of database: 140,377
effective HSP length: 55
effective length of query: 167
effective length of database: 116,782
effective search space: 19502594
effective search space used: 19502594
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 42 (21.0 bits)