Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001739-TA|BGIBMGA001739-PA|IPR001217|STAT transcription
factor, IPR000980|SH2 motif, IPR008967|p53-like transcription factor,
DNA-binding, IPR013799|STAT transcription factor, protein interaction,
IPR013800|STAT transcription factor, all-alpha, IPR013801|STAT
transcription factor, DNA-binding
         (725 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   2.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   5.0  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 14/42 (33%), Positives = 17/42 (40%)

Query: 683  PPYMSSSPAYAHSPDSHRNTPSVNSRYCPPLSPRGPPHAHTV 724
            PP    + A AHS    ++ P  N RY    S  G    H V
Sbjct: 1761 PPVGHPTNASAHSRSGSQSMPRQNGRYSRVPSQGGGSGTHNV 1802


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 9/32 (28%), Positives = 19/32 (59%)

Query: 314 QVAQITQSQMELVDHMKENITNLRQLQSQVLD 345
           Q A + +++ E ++H++ N+   R  +  VLD
Sbjct: 423 QYAGLLRNRSEYLNHLRANVAEGRNQRKNVLD 454


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.131    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,500
Number of Sequences: 429
Number of extensions: 8778
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 3
length of query: 725
length of database: 140,377
effective HSP length: 63
effective length of query: 662
effective length of database: 113,350
effective search space: 75037700
effective search space used: 75037700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)