GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001739-TA|BGIBMGA001739-PA|IPR001217|STAT transcription
factor, IPR000980|SH2 motif, IPR008967|p53-like transcription factor,
DNA-binding, IPR013799|STAT transcription factor, protein interaction,
IPR013800|STAT transcription factor, all-alpha, IPR013801|STAT
transcription factor, DNA-binding
         (725 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      26   0.79 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      26   0.79 
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        25   1.8  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    25   1.8  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    24   3.2  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   7.4  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 26.2 bits (55), Expect = 0.79
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 679 VTTLPPYMSSSPAYAHSPDSHRNTPSVNSRYCPPLSPRGP-PH 720
           V+   PYM  SP   H     +  P  +  + PP +P G  PH
Sbjct: 713 VSVASPYMLQSPLTPHEAFDVKLPPPPHPHHQPPRNPVGTNPH 755


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 26.2 bits (55), Expect = 0.79
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 679 VTTLPPYMSSSPAYAHSPDSHRNTPSVNSRYCPPLSPRGP-PH 720
           V+   PYM  SP   H     +  P  +  + PP +P G  PH
Sbjct: 605 VSVASPYMLQSPLTPHEAFDVKLPPPPHPHHQPPRNPVGTNPH 647


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 654 DDVFSKYYTKPENEMLKNGYVKPVLVTTLPPYMSSSPAYAHSP-DSHRNTPSVN 706
           DD F+   T     ++   Y  PV   +  P +  +   AH+P  SH   PS N
Sbjct: 304 DDAFNSVATPTPTSVMTELYPSPVPGHSTSPNLPLTHNIAHNPYPSHSIYPSSN 357


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 34  LASWIESRIWTAEPEDQQRSFVNELVQEIQTNADLM 69
           L S + SR W A P +Q    +N  V +I+ + D M
Sbjct: 273 LDSLVASRTWPARPVNQVPRDLNREVDQIRLSLDDM 308


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 88  FHMQYSHAPQELYAY 102
           FH QY+H P E Y +
Sbjct: 440 FHNQYAHYPAEYYGH 454


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 10/44 (22%), Positives = 27/44 (61%)

Query: 44  TAEPEDQQRSFVNELVQEIQTNADLMLSPDMFVTKMKLLEAAKN 87
           T + + Q+ S V + ++++    D +L+PD+ ++ +++ +  KN
Sbjct: 355 TLKSQVQRESDVVDSLKDVIEIVDKLLNPDLGLSLLQVAQIFKN 398


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.131    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,464
Number of Sequences: 317
Number of extensions: 6909
Number of successful extensions: 24
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 6
length of query: 725
length of database: 114,650
effective HSP length: 62
effective length of query: 663
effective length of database: 94,996
effective search space: 62982348
effective search space used: 62982348
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)