Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001737-TA|BGIBMGA001737-PA|undefined
         (180 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.5  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   5.9  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   7.8  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 9/34 (26%), Positives = 14/34 (41%)

Query: 66   VDGDEDTELYGPPQYSPSRIAPDDEHQTNEDQTD 99
            V+  E+     PP    S + P  +H T +   D
Sbjct: 1785 VEAVEEEREEAPPSVHSSTVVPPPQHSTTQSLVD 1818


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 6/20 (30%), Positives = 12/20 (60%)

Query: 14  SIDVENDEPSASGFGAEYQW 33
           S  + +D    +G+G E++W
Sbjct: 364 SPSINDDGTCGNGYGCEHRW 383


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/35 (25%), Positives = 14/35 (40%)

Query: 77  PPQYSPSRIAPDDEHQTNEDQTDMQTTNETETEDR 111
           PPQ    +   D    T  D+ +  TT+     D+
Sbjct: 35  PPQSPNQQYTKDCSSPTPSDKLNTSTTSSVNVNDQ 69


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.309    0.125    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,748
Number of Sequences: 317
Number of extensions: 1631
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 180
length of database: 114,650
effective HSP length: 53
effective length of query: 127
effective length of database: 97,849
effective search space: 12426823
effective search space used: 12426823
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.3 bits)
S2: 41 (20.6 bits)