GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001737-TA|BGIBMGA001737-PA|undefined
         (180 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   2.3  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   2.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.0  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   4.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.3  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   9.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.2  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/40 (25%), Positives = 19/40 (47%)

Query: 79  QYSPSRIAPDDEHQTNEDQTDMQTTNETETEDRIEEPTPK 118
           +YS SR      ++   +    + T++  ++DR E  T K
Sbjct: 38  RYSRSREREQKSYKNEREYRKYRETSKERSQDRTERETSK 77


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/40 (25%), Positives = 19/40 (47%)

Query: 79  QYSPSRIAPDDEHQTNEDQTDMQTTNETETEDRIEEPTPK 118
           +YS SR      ++   +    + T++  ++DR E  T K
Sbjct: 38  RYSRSREREQKSYKNEREYRKYRETSKERSQDRTERETSK 77


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 6   PDTSSEEGSIDVENDEPSASGF 27
           PD S E+G++ + N + +  G+
Sbjct: 731 PDISVEDGTLSINNIQKTNEGY 752


>AY739659-1|AAU85298.1|  288|Apis mellifera
          hyperpolarization-activated ion channelvariant T
          protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 68 GDEDTELYGPPQYSPSRIAPDDE 90
          G +D  LYG P+  P    P  E
Sbjct: 12 GVDDVSLYGTPKEEPGPGLPGQE 34


>AY739658-1|AAU85297.1|  664|Apis mellifera
          hyperpolarization-activated ion channelvariant L
          protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 68 GDEDTELYGPPQYSPSRIAPDDE 90
          G +D  LYG P+  P    P  E
Sbjct: 12 GVDDVSLYGTPKEEPGPGLPGQE 34


>AY280848-1|AAQ16312.1|  632|Apis mellifera
          hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 68 GDEDTELYGPPQYSPSRIAPDDE 90
          G +D  LYG P+  P    P  E
Sbjct: 12 GVDDVSLYGTPKEEPGPGLPGQE 34


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 72  TELYGPPQYSPSRIAPDDEHQTNEDQT 98
           +EL    Q SP+ + P+D+ Q  +  T
Sbjct: 467 SELESNMQISPNELKPNDKSQVIKQNT 493


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 14/85 (16%), Positives = 29/85 (34%)

Query: 34  CGEWRVRATALQDADSRAATCVRRASNDQALVVDGDEDTELYGPPQYSPSRIAPDDEHQT 93
           CG     A AL       + C    ++  +            G P  S S       + +
Sbjct: 156 CGPGAAAAAALLSKRRSVSECSLGTASSTSSTASSRNSDRSAGSPSVSESDEVDVIGYTS 215

Query: 94  NEDQTDMQTTNETETEDRIEEPTPK 118
           N+  TD  ++ ++ ++  +   T +
Sbjct: 216 NQSDTDDHSSVQSSSDSGVTMSTSR 240


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 10/32 (31%), Positives = 12/32 (37%)

Query: 78  PQYSPSRIAPDDEHQTNEDQTDMQTTNETETE 109
           P Y  SR      H  + +  D QTT     E
Sbjct: 336 PYYMYSREQYSQSHLISNENRDFQTTPTVSVE 367


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.125    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,445
Number of Sequences: 429
Number of extensions: 1926
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 180
length of database: 140,377
effective HSP length: 54
effective length of query: 126
effective length of database: 117,211
effective search space: 14768586
effective search space used: 14768586
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.3 bits)
S2: 41 (20.6 bits)