GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001735-TA|BGIBMGA001735-PA|IPR009818|Ataxin-2,
C-terminal
         (377 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    29   0.055
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    29   0.055
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    29   0.055
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    24   2.1  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   6.3  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   6.3  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 29.1 bits (62), Expect = 0.055
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 130 NRP-VTNGHKHYPTTSNSGPTISLEEAVSRSTLNPLAAEFVPSQSRLPTHSKQTTEEKTE 188
           N P  TN + ++   SN   ++      S S  + L  E   S      H      +K  
Sbjct: 130 NTPSATNNNTNFNNNSNGASSVG-----SSSPFDKLIEEDSRSNEDTSLHPSPRITKKAN 184

Query: 189 QLPVQVQESRDSPESC 204
            + V+V+  R+SP SC
Sbjct: 185 SVSVKVENRRNSPNSC 200


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 29.1 bits (62), Expect = 0.055
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 130 NRP-VTNGHKHYPTTSNSGPTISLEEAVSRSTLNPLAAEFVPSQSRLPTHSKQTTEEKTE 188
           N P  TN + ++   SN   ++      S S  + L  E   S      H      +K  
Sbjct: 78  NTPSATNNNTNFNNNSNGASSVG-----SSSPFDKLIEEDSRSNEDTSLHPSPRITKKAN 132

Query: 189 QLPVQVQESRDSPESC 204
            + V+V+  R+SP SC
Sbjct: 133 SVSVKVENRRNSPNSC 148


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 29.1 bits (62), Expect = 0.055
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 130 NRP-VTNGHKHYPTTSNSGPTISLEEAVSRSTLNPLAAEFVPSQSRLPTHSKQTTEEKTE 188
           N P  TN + ++   SN   ++      S S  + L  E   S      H      +K  
Sbjct: 261 NTPSATNNNTNFNNNSNGASSVG-----SSSPFDKLIEEDSRSNEDTSLHPSPRITKKAN 315

Query: 189 QLPVQVQESRDSPESC 204
            + V+V+  R+SP SC
Sbjct: 316 SVSVKVENRRNSPNSC 331


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 194 VQESRDSPESCTVSSPDPEPIVEKTE 219
           V E  DSP S   ++P P P +E  E
Sbjct: 214 VSEHPDSPNSKKSATPSPPPQLEVNE 239


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 123 DEQRERQNRPVTNGHKHYPTTSNS 146
           DEQ+ R N+P T+ ++ +    N+
Sbjct: 360 DEQQWRNNQPSTSNNRWHNNNGNN 383


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)

Query: 193 QVQESRDSPESCTVSSPD---PEPIVEKTEVSL 222
           + Q+ +D P S T  SPD    EP +  +E +L
Sbjct: 272 KAQKEKDKPNSTTNGSPDVIKVEPELSDSEKTL 304


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.306    0.125    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,474
Number of Sequences: 317
Number of extensions: 1660
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 377
length of database: 114,650
effective HSP length: 58
effective length of query: 319
effective length of database: 96,264
effective search space: 30708216
effective search space used: 30708216
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
S2: 44 (21.8 bits)