Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001735-TA|BGIBMGA001735-PA|IPR009818|Ataxin-2,
C-terminal
(377 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0130 + 13241085-13241151,13241268-13241339,13242458-132428... 31 1.5
09_04_0078 + 14379720-14379786,14379903-14379974,14381093-143814... 31 1.5
07_01_0549 + 4082672-4082731,4083424-4083489,4083628-4083674,408... 31 1.5
02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178 31 2.0
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 30 2.6
02_05_0959 + 33086498-33086544,33087295-33087967,33088665-330890... 30 3.5
02_02_0238 + 8163922-8164362,8165008-8165118,8165205-8165249,816... 29 8.1
>10_07_0130 +
13241085-13241151,13241268-13241339,13242458-13242862,
13243057-13243112,13244116-13244274,13244379-13244498,
13244591-13245361,13245902-13246078,13246192-13246669,
13247502-13248094
Length = 965
Score = 31.1 bits (67), Expect = 1.5
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 124 EQRERQNRPVTNGHKHYPTTSNSGPTISLEEAVSRSTLNPLAAEFVPSQS 173
E + R GH H+ T N PT E V +T+N LA P++S
Sbjct: 436 EGNKNTPRSSARGHHHHQTVEN--PTAGDETNVQATTINVLACNAAPTES 483
>09_04_0078 +
14379720-14379786,14379903-14379974,14381093-14381497,
14382835-14382911,14383016-14383135,14383227-14383997,
14384933-14385146,14385269-14385735
Length = 730
Score = 31.1 bits (67), Expect = 1.5
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 131 RPVTNGHKHYPTTSNSGPTISLEEAVSRSTLNPLAAEFVPSQS 173
R GH H+ T N PT S E V +T+N LA P++S
Sbjct: 397 RSSARGHHHHRTMEN--PTASDETNVQATTINVLARNAAPTES 437
>07_01_0549 +
4082672-4082731,4083424-4083489,4083628-4083674,
4083757-4083802,4083905-4083985,4084105-4084147,
4084258-4084307,4084392-4084473,4084538-4084587,
4084687-4084760,4084870-4084921,4085034-4085459,
4085816-4086403
Length = 554
Score = 31.1 bits (67), Expect = 1.5
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 123 DEQRERQNRPVTNGHKHYPTTSNSGPTISLEEAVSRSTLNPLAAEFVPSQSRLPTHSKQT 182
DE + VT P ++S P I LE + T + AAE PS+ L S+ T
Sbjct: 318 DEVIHGNHSRVTKSPAPTPRRASSTPRIRLEPS---KTFHARAAETPPSKCSLERASQPT 374
Query: 183 TEEKTEQLPVQVQESRDSPESCT-VSSPD 210
T +Q E R + T + SPD
Sbjct: 375 RRASTPVNMLQTPEKRQGADILTRLKSPD 403
>02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178
Length = 1143
Score = 30.7 bits (66), Expect = 2.0
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 141 PTTSNSGPTISLEEAVSRSTLNPLAAEFVPSQSRLPTHSKQTTEEKTEQLPVQVQESRDS 200
P T N+ P + + RST LA SR + EEK ++ + QE
Sbjct: 1030 PNTLNASPQAAKKRLRLRSTRPALALRRTVEGSRRRATAGFPVEEKRPRVVAEAQERETG 1089
Query: 201 PE---SCTVSSPDPEP 213
P+ C SP P P
Sbjct: 1090 PQIRPPCRRRSPPPPP 1105
>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 30.3 bits (65), Expect = 2.6
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 135 NGHKHYPTTSNSGPTISLEEAVSRST--LNPLAAEFVPSQSRLP 176
+GH+ S + L EA + +T +NP AAEFVP QSR P
Sbjct: 1605 SGHRGPRNKSALPSSEGLTEANTFATRVMNPNAAEFVPGQSRSP 1648
>02_05_0959 +
33086498-33086544,33087295-33087967,33088665-33089058,
33089140-33089210,33089373-33089497,33089705-33089821,
33094128-33094238,33094321-33094413,33094726-33094984,
33095067-33095189
Length = 670
Score = 29.9 bits (64), Expect = 3.5
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 159 STLNPLAAEFVPSQSRLPTHSKQTTE 184
+TLNP AAEFVPS R P S+ +
Sbjct: 42 TTLNPNAAEFVPSTFRSPFGSRTVAD 67
>02_02_0238 +
8163922-8164362,8165008-8165118,8165205-8165249,
8166066-8166138,8166215-8166327,8166430-8166489,
8167287-8167334,8167422-8167490,8167618-8167679,
8167771-8167828
Length = 359
Score = 28.7 bits (61), Expect = 8.1
Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 152 LEEAVSRSTLNPLAAEFVPSQSRLP 176
LEE +S+ LNP A EFVPS R P
Sbjct: 64 LEELMSK--LNPRAQEFVPSSRRAP 86
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.306 0.125 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,405,387
Number of Sequences: 37544
Number of extensions: 217016
Number of successful extensions: 413
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 410
Number of HSP's gapped (non-prelim): 7
length of query: 377
length of database: 14,793,348
effective HSP length: 83
effective length of query: 294
effective length of database: 11,677,196
effective search space: 3433095624
effective search space used: 3433095624
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
S2: 61 (28.7 bits)
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