GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001735-TA|BGIBMGA001735-PA|IPR009818|Ataxin-2,
C-terminal
         (377 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    28   0.37 
AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein p...    25   4.5  

>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 28.3 bits (60), Expect = 0.37
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 130 NRPVTNGHKHYPTTSNSGPTISLEEAVSRSTLNPLAAEFVPSQSRLPTHSKQTT--EEKT 187
           + PVT+   H PTTS   P    +E + R+    L +  VP    +P  +  T   EE T
Sbjct: 380 SHPVTDWPTHQPTTSQENPESVTDEEI-RNIGRSLKSRKVPGPDGIPNAALATAMIEEPT 438


>AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein
           protein.
          Length = 527

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 12/53 (22%), Positives = 22/53 (41%)

Query: 121 LEDEQRERQNRPVTNGHKHYPTTSNSGPTISLEEAVSRSTLNPLAAEFVPSQS 173
           LED+QR+R  +      +     +   PT+       R  +   A+  VP ++
Sbjct: 186 LEDQQRQRWRQQQQKQQRQQRLPAQQWPTVQQSVRAQRQGVTESASSAVPDEA 238


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.306    0.125    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 255,420
Number of Sequences: 2123
Number of extensions: 7054
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 2
length of query: 377
length of database: 516,269
effective HSP length: 65
effective length of query: 312
effective length of database: 378,274
effective search space: 118021488
effective search space used: 118021488
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
S2: 49 (23.8 bits)