Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001735-TA|BGIBMGA001735-PA|IPR009818|Ataxin-2,
C-terminal
(377 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g49530.1 68418.m06130 SIN-like family protein low similarity ... 33 0.24
At4g00890.1 68417.m00120 proline-rich family protein contains pr... 31 0.96
At2g43210.2 68415.m05371 UBX domain-containing protein contains ... 31 1.7
At2g43210.1 68415.m05370 UBX domain-containing protein contains ... 31 1.7
At3g42660.1 68416.m04436 transducin family protein / WD-40 repea... 30 2.2
At1g63470.1 68414.m07177 DNA-binding family protein contains a A... 29 3.9
At4g18150.1 68417.m02697 hypothetical protein 29 5.1
At2g26280.1 68415.m03154 smr (Small MutS Related) domain-contain... 29 5.1
At2g36320.1 68415.m04458 zinc finger (AN1-like) family protein c... 29 6.7
At2g17180.1 68415.m01984 zinc finger (C2H2 type) family protein ... 29 6.7
At1g16220.1 68414.m01942 protein phosphatase 2C family protein /... 29 6.7
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 28 8.9
At2g42300.1 68415.m05236 basic helix-loop-helix (bHLH) family pr... 28 8.9
At1g26450.1 68414.m03226 beta-1,3-glucanase-related similar to b... 28 8.9
>At5g49530.1 68418.m06130 SIN-like family protein low similarity to
Sex-lethal interactor [Drosophila melanogaster]
GI:6049274; contains Pfam profile PF04801: Sin-like
protein conserved region
Length = 689
Score = 33.5 bits (73), Expect = 0.24
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 142 TTSNSGPTISLEEAV---SRSTLNPL--AAEFVPSQSRLPTHSKQTTEEKTEQLPVQVQE 196
TT PT+ V + LNP+ A+ PS L + K+ EE TE+ V
Sbjct: 196 TTWKQPPTLDYAVGVLSGDKLHLNPVHAVAQLRPSMQSLSSDKKKKQEESTEE---SVGT 252
Query: 197 SRDSPESCTVSSPDPEPIVEKTEVSL 222
S+ + +S D +PI E+T VSL
Sbjct: 253 SKKQNKGVQQASTDQKPINEETWVSL 278
>At4g00890.1 68417.m00120 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 431
Score = 31.5 bits (68), Expect = 0.96
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 148 PTISLEEAVSRSTLNPLAAEFVPSQSRLPTHSKQTTEEKTEQLPVQVQESRDSPESCTVS 207
P+ S++E RS L A+ P LP+ S E +++ P+ +S S T S
Sbjct: 207 PSKSIDETRLRSPLMSQASSPPP----LPSKSIDENETRSQSPPISPPKSDKQARSQTHS 262
Query: 208 SPDPEPIV 215
SP P P++
Sbjct: 263 SPSPPPLL 270
>At2g43210.2 68415.m05371 UBX domain-containing protein contains
Pfam profile PF00789: UBX domain
Length = 531
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 165 AAEFVPSQSRLPTHSKQTTEEKTEQLPVQVQESRDSPESCTVSSPDPEPIVEKTEVSL 222
A+ PS+++ S TTE + V+ +ES + C + P P V+ T+ ++
Sbjct: 167 ASSVQPSETKSTVTSASTTENNDGTVAVKGKESAEPSNLCDTTKNQPAPSVDGTKANV 224
>At2g43210.1 68415.m05370 UBX domain-containing protein contains
Pfam profile PF00789: UBX domain
Length = 531
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 165 AAEFVPSQSRLPTHSKQTTEEKTEQLPVQVQESRDSPESCTVSSPDPEPIVEKTEVSL 222
A+ PS+++ S TTE + V+ +ES + C + P P V+ T+ ++
Sbjct: 167 ASSVQPSETKSTVTSASTTENNDGTVAVKGKESAEPSNLCDTTKNQPAPSVDGTKANV 224
>At3g42660.1 68416.m04436 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400); AND-1
protein - Homo sapiens, EMBL:AJ006266
Length = 951
Score = 30.3 bits (65), Expect = 2.2
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 138 KHYPTTSNSGPTISLEEAVSRSTLNP 163
+H+ T+S+S P+IS+ + +S STL P
Sbjct: 30 EHFVTSSSSDPSISVHDGLSTSTLPP 55
>At1g63470.1 68414.m07177 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 378
Score = 29.5 bits (63), Expect = 3.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 131 RPVTNGHKHYPTTSNSGPTISLEE 154
RP++N + H+P SN GP S+ E
Sbjct: 45 RPMSNPNIHHPQASNPGPPFSMAE 68
>At4g18150.1 68417.m02697 hypothetical protein
Length = 762
Score = 29.1 bits (62), Expect = 5.1
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 123 DEQRERQNRPVTNGHKHYPTTSNSGPTISLEEAVSRSTLNPLAAEFVPSQSRLPTHSKQT 182
+E+ E+ VTN Y S++ S ++ + + + E + + RLP T
Sbjct: 426 EEEAEQPRNAVTNEQVSYQIDSSTQNYNSATDSKTDAVQHEPPQEVINTSFRLPKQQGYT 485
Query: 183 TEEKTEQLPVQVQESRDS 200
+ LP +Q+ R+S
Sbjct: 486 SSLPNTLLPSGIQDGRES 503
>At2g26280.1 68415.m03154 smr (Small MutS Related) domain-containing
protein weak similarity to PRLI-interacting factor N
[Arabidopsis thaliana] GI:11139276; contains Pfam
profile PF01713: Smr domain
Length = 567
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 142 TTSNSGPTISLEEAVSRSTLNPLAAEFVPSQSRLPTHSKQTT 183
T S P +S ++ +TLNP AAEFVP R P+ +T
Sbjct: 4 TKKASEPKLS-GTSIKPTTLNPHAAEFVPFTLRSPSSGGTST 44
>At2g36320.1 68415.m04458 zinc finger (AN1-like) family protein
contains Pfam domain, PF01428: AN1-like Zinc finger
Length = 161
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 159 STLNPLAA---EFVPSQSRLPTHSKQTTEEKTEQLPVQVQESRDSPESCTV 206
S+L+P+ A E ++ +PT +K+T E+K Q+P + P CTV
Sbjct: 55 SSLSPVIAPVLENYAAELEIPT-TKKTEEKKPIQIPTEQPSPPQRPNRCTV 104
>At2g17180.1 68415.m01984 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 270
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 168 FVPSQSRLPTHSKQTTEEKTEQLPVQVQESRDSPESCTVSSPDPE 212
F S LP++++ ++T+ +V S SP V+ PDP+
Sbjct: 15 FASSNVTLPSYNQNPRRKRTKLTNNEVGSSSSSPRPKPVTQPDPD 59
>At1g16220.1 68414.m01942 protein phosphatase 2C family protein /
PP2C family protein similar to protein phosphatase-2C;
PP2C (GI:3643088) [Mesembryanthemum crystallinum];
contains Pfam PF00481 : Protein phosphatase 2C domain;
Length = 491
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 144 SNSGPTISLEEAVSRSTLNPLAAEFVPSQSRLPTHSKQTTEEKTEQLPVQVQESRDSPES 203
+++G T+ + E V+ S + + S S+ ++ + E E +PV + +PES
Sbjct: 379 TSAGGTVEVSETVNHSHEESTESVTITS-SKDADKKEEASTETNETVPVWEIKEEKTPES 437
Query: 204 CTVSS 208
C + S
Sbjct: 438 CRIES 442
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 28.3 bits (60), Expect = 8.9
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
Query: 129 QNRPVTNGHKHYPTTSNSGPTISLEEAVSRSTLNPLAAEFVPSQSRLPTHSKQTTEEKTE 188
+N+P H P+ S + P S S ++P+A PS+S+ P S +
Sbjct: 131 RNQPSAPAHSPVPSVSPTQPP------KSHSPVSPVAPASAPSKSQPPRSSVSPAQPPKS 184
Query: 189 QLPVQVQESRDSPESCTVSSP-DPEP 213
P+ + SP T SP P P
Sbjct: 185 SSPISHTPAL-SPSHATSHSPATPSP 209
>At2g42300.1 68415.m05236 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 327
Score = 28.3 bits (60), Expect = 8.9
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 132 PVTNGHK--HYPTTSNSGPTISLEEAVSRSTLNPLAAEFVPSQSRLPTHSKQTTEEKTEQ 189
PVT + H+P +S+S +S +TL+P A PS S L + + + TEQ
Sbjct: 52 PVTQAMELLHFPDSSSSQARTVTSGDISPTTLHPFGALTFPSNSLLLDRAARFSVIATEQ 111
>At1g26450.1 68414.m03226 beta-1,3-glucanase-related similar to
beta-1,3-glucanase GI:15150341 from [Camellia sinensis];
C-terminal homology only
Length = 197
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/66 (25%), Positives = 25/66 (37%)
Query: 145 NSGPTISLEEAVSRSTLNPLAAEFVPSQSRLPTHSKQTTEEKTEQLPVQVQESRDSPESC 204
++ P + +S S+ N PS T S TT T + D P S
Sbjct: 92 STSPPSTTSSCLSSSSSNGTPTAGYPSTGNSTTASPGTTNPSTGNSTNSTLPTNDKPTSS 151
Query: 205 TVSSPD 210
T++ PD
Sbjct: 152 TITFPD 157
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.306 0.125 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,093,669
Number of Sequences: 28952
Number of extensions: 183988
Number of successful extensions: 375
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 365
Number of HSP's gapped (non-prelim): 14
length of query: 377
length of database: 12,070,560
effective HSP length: 82
effective length of query: 295
effective length of database: 9,696,496
effective search space: 2860466320
effective search space used: 2860466320
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
S2: 60 (28.3 bits)
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