Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001734-TA|BGIBMGA001734-PA|IPR002744|Protein of unknown
function DUF59
         (154 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   4.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   5.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   7.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   7.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   7.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.8  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 55  LEELRVVEEKNIIVNNDDSTVLVNF 79
           L ELR +  K I+VN +  TV  ++
Sbjct: 404 LRELRNLGRKTIMVNYNPETVSTDY 428


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 15  KGSEREITSSERDEDLQDEFDDREI 39
           +GS  +  SSE D D  D+ ++++I
Sbjct: 189 EGSSGDDLSSEWDSDYTDKSNEKKI 213


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 42  LIRNINDPEHPLTLEELRVV 61
           ++ N++DPE+     ELR +
Sbjct: 169 VLNNLHDPEYSARENELRAL 188


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 42  LIRNINDPEHPLTLEELRVV 61
           ++ N++DPE+     ELR +
Sbjct: 169 VLNNLHDPEYSARENELRAL 188


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 42  LIRNINDPEHPLTLEELRVV 61
           ++ N++DPE+     ELR +
Sbjct: 169 VLNNLHDPEYSARENELRAL 188


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 9.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 52  PLTLEELRVVEEKNIIVNNDDSTVLV 77
           P T   LR+V E  I  ++   TV +
Sbjct: 944 PATTYHLRIVAENEIGASDPSDTVTI 969


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.132    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,996
Number of Sequences: 429
Number of extensions: 1708
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 154
length of database: 140,377
effective HSP length: 53
effective length of query: 101
effective length of database: 117,640
effective search space: 11881640
effective search space used: 11881640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.0 bits)
S2: 40 (20.2 bits)