GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001734-TA|BGIBMGA001734-PA|IPR002744|Protein of unknown
function DUF59
         (154 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   1.5  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    20   8.3  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    20   8.3  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 11  HIYEKGSEREITSSERDEDLQDEFDDRE 38
           H YEK  + E  S + D+D  D+  + E
Sbjct: 274 HKYEKIDKEEHESMDDDDDDDDDMSNSE 301


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 84  PHCSMATLIGLSIRVQLLRALPSRFKVT 111
           P C + T++ +++ V LL  + S  +VT
Sbjct: 5   PRCKLRTVLIVTLLVVLLVHISSSERVT 32


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
          homeodomain protein protein.
          Length = 232

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 7/24 (29%), Positives = 16/24 (66%)

Query: 62 EEKNIIVNNDDSTVLVNFTPTIPH 85
          +++NI V++DD+    + +P+  H
Sbjct: 38 DDENITVDDDDTDGRESLSPSSAH 61


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.132    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,453
Number of Sequences: 317
Number of extensions: 1075
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 154
length of database: 114,650
effective HSP length: 52
effective length of query: 102
effective length of database: 98,166
effective search space: 10012932
effective search space used: 10012932
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.0 bits)
S2: 40 (20.2 bits)