GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001734-TA|BGIBMGA001734-PA|IPR002744|Protein of unknown
function DUF59
         (154 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr...   131   5e-32
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    27   0.96 
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    27   0.96 
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    27   1.7  
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    26   2.9  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   3.9  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   5.1  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   5.1  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   6.8  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    25   6.8  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   6.8  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    24   8.9  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    24   8.9  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    24   8.9  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    24   8.9  

>SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 179

 Score =  131 bits (316), Expect = 5e-32
 Identities = 69/120 (57%), Positives = 89/120 (74%), Gaps = 4/120 (3%)

Query: 20  EITSSERD-EDLQDEFDDREIFDLIRNINDPEHPLTLEELRVVEEKNI-IVNN--DDSTV 75
           EI S + + ++ +D  D +EI+DL+  INDPEHPLTL +L VV+ ++I +V+N   DS +
Sbjct: 39  EIESEQTNIKEERDPIDPQEIYDLLAKINDPEHPLTLAQLSVVKLEDIEVVDNVEGDSYI 98

Query: 76  LVNFTPTIPHCSMATLIGLSIRVQLLRALPSRFKVTVQVSEGSHASEHAVNKQLADKERV 135
            V+ TPTIPHCSM TLIGL IRV+L R LP RF V V+V +G+HASE  VNKQL DKERV
Sbjct: 99  TVHITPTIPHCSMCTLIGLCIRVRLERCLPPRFHVDVKVKKGTHASESQVNKQLNDKERV 158


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 27.5 bits (58), Expect = 0.96
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 27  DEDLQDEFDDREIFDLIRNINDPEHPLTLEELRVVEEKNIIVNNDDSTVLVN 78
           D D +D  ++  + D    I   +H ++L  L  +E++NII   DD    +N
Sbjct: 118 DTDSEDLDEESVVKDTEEIIEQAQHDVSLRNLSGIEDENII---DDGETAIN 166


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 27.5 bits (58), Expect = 0.96
 Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 25   ERDEDLQDEFDDREIFDLIRNINDPEHPLTLEELRVVEEKNIIVNNDDSTVLV-NFTPTI 83
            ER+++L+   D+R +   I +I      L LE+  +++E +I+  +  S   V N + T 
Sbjct: 1760 EREKNLRIRQDNRHMHAEIGDIRTKFDELVLEKTNLLKENSILQADLQSLSRVNNSSSTA 1819

Query: 84   PHCSMATLIGLSIRVQLLR 102
               + + L+ L+ ++Q +R
Sbjct: 1820 QQNAQSQLLSLTAQLQEVR 1838


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 11/53 (20%), Positives = 29/53 (54%)

Query: 14  EKGSEREITSSERDEDLQDEFDDREIFDLIRNINDPEHPLTLEELRVVEEKNI 66
           ++  E  I   +++++ +++ + + IFDL  +  DP   + L +    +++NI
Sbjct: 169 QEAREAAIREHQKEKERREQVEQQIIFDLATSGKDPNKIIQLSDSLKKQQENI 221


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 4   TADNINPHIYEKGSEREITSSERDEDLQDEFDDR 37
           ++++ N   Y KGS R  + +E DE+ +  F +R
Sbjct: 448 SSESANGTSYSKGSSRRNSKNETDEEKRKSFLER 481


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 10/36 (27%), Positives = 21/36 (58%)

Query: 5   ADNINPHIYEKGSEREITSSERDEDLQDEFDDREIF 40
           A ++NP I  +   R++  +  +E+ +DE +D + F
Sbjct: 659 APSLNPFIPRRNQPRDMFKTSAEEENEDEDEDDDKF 694


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%)

Query: 6   DNIN---PHIYEKGSEREITSSERDEDL-QDEFD 35
           DN N   P +YE G E +    E +ED+ +DE D
Sbjct: 496 DNSNFHEPELYESGLEYDEDEEEDEEDVDEDELD 529


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 45   NINDP--EHPLTLEELRVVEEKNIIVNNDDSTVLVNFTPTIP 84
            ++N P  E PL   E  +  + N+I+  D+ + L++FT + P
Sbjct: 1565 SLNPPPFEFPLQPTE-HMFSDSNVIIREDEPSSLISFTLSSP 1605


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 11/44 (25%), Positives = 23/44 (52%)

Query: 9  NPHIYEKGSEREITSSERDEDLQDEFDDREIFDLIRNINDPEHP 52
          N  I +K +++ I      ++ +DE   R++   I+N+N  + P
Sbjct: 20 NDKIKKKDTDKGIRQKHSKKEGKDETLKRDVEKFIQNVNSEDTP 63


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 28  EDLQDEFDDREIFDLIRNINDPEHPLTLEELRVVEEKNIIVN 69
           EDL +       F L+R+ N     L L E   + +K+I+ N
Sbjct: 200 EDLPEGIQSYAFFQLLRSCNRQSMRLLLNECEPLLKKDILSN 241


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
          kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 8  INPHIYEKGSEREITSSERDEDLQDE 33
          +N HI E GS R   +   D +L+D+
Sbjct: 10 VNSHILENGSRRSSINPILDSELRDK 35


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 8/23 (34%), Positives = 18/23 (78%)

Query: 15  KGSEREITSSERDEDLQDEFDDR 37
           + S+RE+   ERD++L+++ ++R
Sbjct: 184 RASKREMERLERDQELRNKIEER 206


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 10  PHIYEKGSEREITSSERDEDLQDEFDDRE 38
           P++  K S  ++ S + + DLQD+ +  E
Sbjct: 237 PNVESKESSSKVNSKDENFDLQDDSESSE 265


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 16  GSEREITSSERDEDL---QDEFDDREIFDLIRNINDPEHPLTLEELRVVEEK 64
           G E E  S E   DL   + E  +R IFDL+ +    +HPL +E   ++ E+
Sbjct: 103 GYEEEKNSPEEVNDLFSWKIEIYNR-IFDLLSSKTKVDHPLCVECAELLTEE 153


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 4/46 (8%)

Query: 7   NINPHIYEKGSEREITSSERDEDLQDEFD----DREIFDLIRNIND 48
           N++ H Y   S+ E   SE ++   DE D    D+++ + +++++D
Sbjct: 589 NLSEHSYSSSSDDEQRISELNDRELDEIDWQAADQDVENALKDLSD 634


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.132    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 628,861
Number of Sequences: 5004
Number of extensions: 26451
Number of successful extensions: 99
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 16
length of query: 154
length of database: 2,362,478
effective HSP length: 67
effective length of query: 87
effective length of database: 2,027,210
effective search space: 176367270
effective search space used: 176367270
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 50 (24.2 bits)