Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001734-TA|BGIBMGA001734-PA|IPR002744|Protein of unknown
function DUF59
(154 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17381| Best HMM Match : No HMM Matches (HMM E-Value=.) 143 5e-35
SB_41741| Best HMM Match : DUF59 (HMM E-Value=6.1e-08) 130 5e-31
SB_29220| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-05) 33 0.10
SB_48838| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-12) 33 0.10
SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23) 32 0.24
SB_40143| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-09) 32 0.24
SB_9354| Best HMM Match : Endonuclease_7 (HMM E-Value=0.18) 31 0.56
SB_1048| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.56
SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_56809| Best HMM Match : DEAD (HMM E-Value=2.6e-19) 29 2.3
SB_58780| Best HMM Match : VWA (HMM E-Value=1.3e-34) 28 3.9
SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29) 28 3.9
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_5105| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-09) 28 3.9
SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_36998| Best HMM Match : TUDOR (HMM E-Value=0) 27 6.9
SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09) 27 6.9
SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28) 27 9.1
SB_56860| Best HMM Match : Cadherin (HMM E-Value=4.4e-16) 27 9.1
SB_16935| Best HMM Match : Cadherin (HMM E-Value=0) 27 9.1
>SB_17381| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 115
Score = 143 bits (347), Expect = 5e-35
Identities = 69/94 (73%), Positives = 82/94 (87%)
Query: 42 LIRNINDPEHPLTLEELRVVEEKNIIVNNDDSTVLVNFTPTIPHCSMATLIGLSIRVQLL 101
+IR+INDPEHPLTLEEL VVE+ I V++D+S V V FTPTIPHCSMATLIGL+IRV+LL
Sbjct: 1 MIRSINDPEHPLTLEELNVVEQALIDVSDDESYVKVQFTPTIPHCSMATLIGLAIRVRLL 60
Query: 102 RALPSRFKVTVQVSEGSHASEHAVNKQLADKERV 135
R+LP RFKV V+++ G+H SE AVNKQLADKERV
Sbjct: 61 RSLPDRFKVDVKITPGTHQSEIAVNKQLADKERV 94
>SB_41741| Best HMM Match : DUF59 (HMM E-Value=6.1e-08)
Length = 476
Score = 130 bits (314), Expect = 5e-31
Identities = 58/97 (59%), Positives = 78/97 (80%)
Query: 1 MTKTADNINPHIYEKGSEREITSSERDEDLQDEFDDREIFDLIRNINDPEHPLTLEELRV 60
+T +N+NP ++++ ER + + E D+++ D+ DDREIFD+IR+INDPEHPLTLEEL V
Sbjct: 380 VTDRLENVNPTVFQRLKERVVLAEEEDDNIVDKIDDREIFDMIRSINDPEHPLTLEELNV 439
Query: 61 VEEKNIIVNNDDSTVLVNFTPTIPHCSMATLIGLSIR 97
VE+ I V++D+S V V FTPTIPHCSMATLIGL+IR
Sbjct: 440 VEQALIDVSDDESYVKVQFTPTIPHCSMATLIGLAIR 476
>SB_29220| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-05)
Length = 256
Score = 33.1 bits (72), Expect = 0.10
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 76 LVNFTPTIPHCSMATLIGLSIRVQLLRALPSRFKVTVQVSEGSHASEHAVNKQLADKE 133
L NFTP IP +TL + + + LL + + + V + S SH + H ++L DK+
Sbjct: 81 LANFTPLIPGKISSTLFVIYVFLPLL-IMSAAYTVIMIRSRASHINGHEARERLRDKK 137
>SB_48838| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-12)
Length = 556
Score = 33.1 bits (72), Expect = 0.10
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 76 LVNFTPTIPHCSMATLIGLSIRVQLLRALPSRFKVTVQVSEGSHASEHAVNKQLADKE 133
L NFTP IP +TL + + + LL + + + V + S SH + H ++L DK+
Sbjct: 387 LANFTPLIPGKISSTLFVIYVFLPLL-IMSAAYTVIMIRSRASHINGHEARERLRDKK 443
>SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23)
Length = 553
Score = 31.9 bits (69), Expect = 0.24
Identities = 19/73 (26%), Positives = 34/73 (46%)
Query: 6 DNINPHIYEKGSEREITSSERDEDLQDEFDDREIFDLIRNINDPEHPLTLEELRVVEEKN 65
DN N S + +S D D +D I+D +IND ++ + + + + N
Sbjct: 272 DNDNSIYDNDNSINDNDNSINDNDNSINDNDNSIYDNDNSINDNDNSINDNDNSINDNDN 331
Query: 66 IIVNNDDSTVLVN 78
I +ND+S++ N
Sbjct: 332 SIYDNDNSSIYDN 344
Score = 29.1 bits (62), Expect = 1.7
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 6 DNINPHIYEK-GSEREITSSERDEDLQDEFDDREIFDLIRNINDPEHPLTLEELRVVEEK 64
DN N IY+ S + +S D D +D I D +IND ++ + + + +
Sbjct: 335 DNDNSSIYDNDNSIYDNDNSINDNDNSINDNDNSINDNDNSINDNDNSINDNDNSINDND 394
Query: 65 NIIVNNDDS 73
N I +ND+S
Sbjct: 395 NSINDNDNS 403
Score = 27.1 bits (57), Expect = 6.9
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 6 DNINPHIYEKGSEREITSSERDEDLQDEFD-DREIFDLIRNINDPEHPLTLEELRVVEEK 64
DN N S + +S D D +D D I+D +IND ++ + + + +
Sbjct: 314 DNDNSINDNDNSINDNDNSIYDNDNSSIYDNDNSIYDNDNSINDNDNSINDNDNSINDND 373
Query: 65 NIIVNNDDS 73
N I +ND+S
Sbjct: 374 NSINDNDNS 382
>SB_40143| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-09)
Length = 334
Score = 31.9 bits (69), Expect = 0.24
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 76 LVNFTPTIPHCSMATLIGLSIRVQLLRALPSRFKVTVQVSEGSHASEHAVNKQLADKE 133
L +FTP IP + TL + I + L +P+ + V + S SH + H ++L DK+
Sbjct: 159 LRDFTPLIPVKIILTLFFIYIFLPFL-IMPAAYTVIMIRSRASHINGHGARERLRDKK 215
>SB_9354| Best HMM Match : Endonuclease_7 (HMM E-Value=0.18)
Length = 386
Score = 30.7 bits (66), Expect = 0.56
Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 2 TKTADNINPHIYEKGSEREITSSERDEDLQDEFDDREIFDLIRNINDPEHPLTLEELRVV 61
TK + H + G R E + L+ + ++ +IF + N+ + ++E+ +
Sbjct: 204 TKKDTRVRDHCHITGKYRGSAHQECNLKLRIDPEEIKIFVIFHNLRGYDSHFIMQEIGAI 263
Query: 62 EEKNIIVNN--DDSTVLVNFTPTIPHCSMATLIG 93
+K+ VN+ ++ + +N P MA ++G
Sbjct: 264 VKKHTYVNSKGEEKQININAIPNNMEKCMAFILG 297
>SB_1048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 599
Score = 30.7 bits (66), Expect = 0.56
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 17 SEREITSSERDEDLQDEFDDREIFDLIRNINDPEHPLTLEELRVVEEKNIIVNNDDST 74
S + +S +D Q+ DD ++ R+ +D +TL+++ V ++N+ N DD T
Sbjct: 467 SAKGTETSRGTKDAQNS-DDVDVASGTRSADDVTSAVTLDDVMVSSDENVTKNTDDDT 523
>SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 821
Score = 29.1 bits (62), Expect = 1.7
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 74 TVLVN-FTPTIPHCSMATLIGLSIRVQLLRALPSRFKVTVQVSEGSHASEHAVNKQLADK 132
T+LV FTP IP TL + + LL + + + V + S SH + H ++L DK
Sbjct: 158 TILVGVFTPLIPLKISVTLFLIYVFSPLL-IMSAAYTVIMIRSRASHINGHGARERLRDK 216
Query: 133 E 133
+
Sbjct: 217 K 217
>SB_56809| Best HMM Match : DEAD (HMM E-Value=2.6e-19)
Length = 1463
Score = 28.7 bits (61), Expect = 2.3
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 17 SEREITSSERDEDLQDEFDDREIFDLIRNINDPEHPLTLEELRVVEEKNIIVNNDDST 74
S E T E D+D D ++ +L+ D E L +EE EE+ +DD +
Sbjct: 964 SGEESTDEEEDDDDSDADIGLDVGNLVEGSGDGEEMLDVEEEEPQEERQESHEDDDES 1021
>SB_58780| Best HMM Match : VWA (HMM E-Value=1.3e-34)
Length = 264
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 8 INPHIYEKGSEREITSSERDEDLQDEFD 35
I+ HI EKG E+E+ S D D + F+
Sbjct: 179 ISVHIGEKGDEKELNSIADDPDSEHRFE 206
>SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29)
Length = 1890
Score = 27.9 bits (59), Expect = 3.9
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 80 TPTIPHCSMATLIGLSIRVQLLRALPSRFKVTVQVSEGSHASEH 123
+P IP C + GL R +LL A P R ++++ S EH
Sbjct: 866 SPGIP-CDSTSSDGLPSRPRLLSASPRRGPYAIRMARNSECQEH 908
>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5445
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 8 INPHIYEKGSEREITSSERDEDLQDEFD 35
I+ HI EKG E+E+ S D D + F+
Sbjct: 2422 ISVHIGEKGDEKELNSIADDPDSEHRFE 2449
>SB_5105| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-09)
Length = 438
Score = 27.9 bits (59), Expect = 3.9
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 76 LVNFTPTIPHCSMATLIGLSIRVQLLRALPSRFKVTVQVSEGSHASEHAVNKQLADKE 133
L +FTP IP + ++ L + L + + + VT+ S SH + H ++L DK+
Sbjct: 159 LGDFTPLIPW-KIYFILMLIYLLLPLATMSAAYTVTMIRSRASHINGHGARERLRDKK 215
>SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 27.1 bits (57), Expect = 6.9
Identities = 10/34 (29%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 4 TADNINP-HIYEKGSEREITSSERDEDLQDEFDD 36
T D+IN +++E +E+E+ E + +++ E D+
Sbjct: 312 TRDSINSRNVFESSTEKEVKEKEAERNVEAELDE 345
>SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)
Length = 2538
Score = 27.1 bits (57), Expect = 6.9
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 8 INPHIYEKGSEREITSSERDEDLQDEFDDREIFDLIRNINDPEHPLTLEELRVVEEK 64
+N EK E E+ ++ L +D + D++ N+ + P+T EE ++EE+
Sbjct: 2363 LNEVCAEKTVEVEVVEEQQGGQLVRLYDPKTK-DVVNNLVSSKTPVTAEEATLIEEE 2418
>SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)
Length = 1998
Score = 27.1 bits (57), Expect = 6.9
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 18 EREITSSERDEDLQDEFDDREIFDLIRNINDPEHPLTLEELRVVEEKNIIV 68
E E TS ER L+DEF+D + R I D + L E R +EK ++
Sbjct: 1395 EMEKTSGER---LKDEFNDMLARERNRAIEDCKDDLERERRRAQKEKEDLI 1442
>SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28)
Length = 1282
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 3 KTADNINPHIYEKGSEREITSSERDEDLQDEFDDREIFDL 42
K + I H+ + EIT+S +D+ DE D ++ D+
Sbjct: 686 KESKTIGIHVSGEEEPEEITASSLLQDVNDEVFDTDVIDV 725
>SB_56860| Best HMM Match : Cadherin (HMM E-Value=4.4e-16)
Length = 748
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 17 SEREITSSERDEDLQDEFDDREIFDLIRNINDPEHPLTLEELRVVEEKNIIVNNDDSTVL 76
SE E+T D+ + ++ + N+NDP +TL +L V+E N+ + + +
Sbjct: 296 SEIEVTIRATDDGSPQMWLEQTFKVKVLNVNDPPMNITLTKLTVLE--NVPIGTEVGVLT 353
Query: 77 VN 78
N
Sbjct: 354 AN 355
>SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2204
Score = 26.6 bits (56), Expect = 9.1
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 10 PHIYEKGSEREITSSERDEDLQDEFDDREIFDLIRNINDPEHPLTLEELRVVE 62
P YEK IT + RD ++ + N+N+P + L +VE
Sbjct: 951 PLDYEKAQNHNITFNIRDTPYSQISVNQTFIIAVINVNEPPSAINLTNKNIVE 1003
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.314 0.132 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,422,108
Number of Sequences: 59808
Number of extensions: 172577
Number of successful extensions: 609
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 579
Number of HSP's gapped (non-prelim): 34
length of query: 154
length of database: 16,821,457
effective HSP length: 76
effective length of query: 78
effective length of database: 12,276,049
effective search space: 957531822
effective search space used: 957531822
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)
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