Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001733-TA|BGIBMGA001733-PA|undefined
(185 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0705 - 31074246-31074296,31074632-31074770,31075636-310757... 37 0.009
05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603 30 1.3
11_06_0754 - 26935647-26937780,26940890-26941827 29 2.3
04_04_0843 - 28619064-28619280,28619730-28619825,28620349-286207... 29 3.0
03_06_0678 - 35480711-35484658 28 4.0
07_03_0908 + 22507565-22507810,22507925-22508872,22509314-225103... 28 5.2
04_04_1127 - 31098233-31098326,31099968-31100047,31100198-311003... 27 9.1
>02_05_0705 -
31074246-31074296,31074632-31074770,31075636-31075716,
31077228-31077401,31077501-31077649
Length = 197
Score = 37.1 bits (82), Expect = 0.009
Identities = 33/177 (18%), Positives = 76/177 (42%), Gaps = 14/177 (7%)
Query: 9 FTIGSIVATRTCYNENIEGEVLAFDPQTKMLILKCQSSS------------GNPKRHDVN 56
F IG +++ +T E EG++++FD T +L++ S S +R +V
Sbjct: 8 FAIGVLISVKTTLGEEFEGQIVSFDRPTNLLVIHILSKSLPIRSQEGVGRAERGERRNVR 67
Query: 57 IVNLSLVSDVQIKKEVSTVPEPPQS-LNLHRLNTRVRNSIENKRRLVSALSACLDPEGQR 115
++ + + + + + +P L+L ++ R ++ + + PE Q
Sbjct: 68 VLKANYIREFSVVGKADDPLDPAGCVLDLAAIHAREEAALRQAEIEAERIGVGVTPEAQS 127
Query: 116 LFMAIARVIDDVSWAGQSIRVYNNKIHQVMITPPYKVDDVIGEKDSQSYNYIKKFVE 172
+F A+++ + Q + + +V + PY ++V G S + +KK ++
Sbjct: 128 IFDALSKTYILLRLPVQWDKTDIVVMKEVRVCNPYLPENVSG-GTSAANERVKKVLD 183
>05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603
Length = 1132
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/61 (24%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 42 KCQSSSGNPKRHDVNIVNLSLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRL 101
+CQ+ + ++ D+ + +S++S V+++ +PP + LH L + +R +++KR L
Sbjct: 228 ECQAFVRSSQKVDMRRLLISMLSQVRLQ-------QPPDNWKLHSLISSIRTHLQDKRYL 280
Query: 102 V 102
+
Sbjct: 281 I 281
>11_06_0754 - 26935647-26937780,26940890-26941827
Length = 1023
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 42 KCQSSSGNPKRHDVNIVNLSLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRL 101
+C + + ++ DV + +S++S ++++ +PP+S +H L + +R +++KR L
Sbjct: 263 ECWAFVRSSQKPDVRRILISILSQLRLQ-------QPPESWKVHSLISSIRAHLQDKRYL 315
Query: 102 VSALSAC 108
+ C
Sbjct: 316 IIVDDIC 322
>04_04_0843 -
28619064-28619280,28619730-28619825,28620349-28620720,
28620849-28621161,28621183-28621393,28621478-28621681,
28622328-28622726
Length = 603
Score = 28.7 bits (61), Expect = 3.0
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 73 STVPEPPQSLNLHRLNTRVRNSIENKRR-----LVSALSACLDPEGQRLFMAIARVIDDV 127
ST P ++ R+N+ +R+ I K R ++ + L PEG + VID
Sbjct: 505 STYPRTYDLIHADRINSLIRDPISGKSRCDLFDVMLEMDRILRPEGIAVVRDSPDVIDKA 564
Query: 128 SWAGQSIR 135
+ QSIR
Sbjct: 565 AQVAQSIR 572
>03_06_0678 - 35480711-35484658
Length = 1315
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 42 KCQSSSGNPKRHDVNIVNLSLVSDVQIKKEVSTVPEPP--QSLNLHRLNTRVRNSIENKR 99
K ++ G P R +V L + D++ E++T+PE P + LN++ +N ++ S++
Sbjct: 911 KWEAVDGTP-REEVTFPQLYKL-DIRRCPELTTLPEAPKLRDLNIYEVNQQI--SLQAAS 966
Query: 100 RLVSALSA 107
R +++LS+
Sbjct: 967 RYITSLSS 974
>07_03_0908 +
22507565-22507810,22507925-22508872,22509314-22510337,
22510425-22510477
Length = 756
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 1 MSAVVSDCFTIGSIVATRTCYNENIEGEVLAFDPQTKMLILKCQSSS--GNPKRHDVNIV 58
M ++ +C +G+I R +N + + FD M+ C+ G P RH + ++
Sbjct: 553 MDCMLYNCGEMGTISEYRVVIEDNPKDHFVKFDSLNSMVNCSCKGFEFVGIPCRHMLKVL 612
Query: 59 NLSLVSDV 66
+ + D+
Sbjct: 613 DTRNIKDL 620
>04_04_1127 -
31098233-31098326,31099968-31100047,31100198-31100353,
31100481-31100616,31101195-31101346,31102307-31102390,
31102495-31102656
Length = 287
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 8 CFTIGSIVATRTCYNENIEGEVLAFDPQTKMLILKCQSSSGNPKRHDVNIVNLSLVSDVQ 67
C +GS T E + + A DP+T ++ C G P ++ + LS V
Sbjct: 211 CMHMGSFDEAETLLLEALNKD--AKDPETLANLIVCNLHLGKPSSRYLSQLKLSHPDHVL 268
Query: 68 IKKEVS 73
+K+ VS
Sbjct: 269 VKRAVS 274
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.132 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,595,421
Number of Sequences: 37544
Number of extensions: 215833
Number of successful extensions: 513
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 511
Number of HSP's gapped (non-prelim): 8
length of query: 185
length of database: 14,793,348
effective HSP length: 78
effective length of query: 107
effective length of database: 11,864,916
effective search space: 1269546012
effective search space used: 1269546012
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)
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