GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001733-TA|BGIBMGA001733-PA|undefined
         (185 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC044587-1|AAH44587.1|  195|Homo sapiens LSM12 homolog (S. cerev...   142   5e-34
AK055218-1|BAB70877.1|  195|Homo sapiens protein ( Homo sapiens ...   142   6e-34
BC105288-1|AAI05289.1|  131|Homo sapiens LSM12 protein protein.       100   3e-21
DQ021880-1|AAY26398.1|  724|Homo sapiens GRB2-associated binding...    29   7.2  
BC064848-1|AAH64848.1|  724|Homo sapiens GRB2-associated binding...    29   7.2  
AC104685-1|AAY40964.1|  670|Homo sapiens unknown protein.              29   7.2  
AB029030-1|BAA83059.1| 1278|Homo sapiens KIAA1107 protein protein.     29   7.2  
X16479-1|CAA34500.2|  225|Homo sapiens topoisomerase I protein.        29   9.5  
U07806-1|AAB60380.1|  761|Homo sapiens DNA topoisomerase I protein.    29   9.5  
U07804-1|AAB60379.1|  761|Homo sapiens DNA topoisomerase I protein.    29   9.5  
M60706-1|AAA61206.1|  765|Homo sapiens topoisomerase I protein.        29   9.5  
J03250-1|AAA61207.1|  765|Homo sapiens TOP1 protein.                   29   9.5  
BC000943-1|AAH00943.1|  176|Homo sapiens Unknown (protein for IM...    29   9.5  
AL035652-1|CAI19767.1|  765|Homo sapiens topoisomerase (DNA) I p...    29   9.5  
AL022394-1|CAI42886.1|  765|Homo sapiens topoisomerase (DNA) I p...    29   9.5  

>BC044587-1|AAH44587.1|  195|Homo sapiens LSM12 homolog (S.
           cerevisiae) protein.
          Length = 195

 Score =  142 bits (345), Expect = 5e-34
 Identities = 72/177 (40%), Positives = 113/177 (63%), Gaps = 5/177 (2%)

Query: 1   MSAVVSDCFTIGSIVATRTCYNENIEGEVLAFDPQTKMLILKCQSSSGNPKRHDVNIVNL 60
           M+A   + F++GS V+ RTC  + ++GEV+AFD Q+KML LKC SSSG P   D+ ++NL
Sbjct: 1   MAAPPGEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINL 60

Query: 61  SLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAI 120
             VS+V+I  + +  P P  SLN+ +L ++ R   E K     A+SA +  EGQ+LF  I
Sbjct: 61  QYVSEVEIINDRTETPRPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTI 120

Query: 121 ARVIDDVSWAGQSIRVYNNKIHQVMITPPYKVDDVIGEKDSQSYNYIKKFVERHWRD 177
            + I D  W  ++I V    + +V+ITPPY+V++  G K+  + ++++K VE+H+RD
Sbjct: 121 HKTIKDCKWQEKNIVV----MEEVVITPPYQVENCKG-KEGSALSHVRKIVEKHFRD 172


>AK055218-1|BAB70877.1|  195|Homo sapiens protein ( Homo sapiens
           cDNA FLJ30656 fis, clone DFNES2000292. ).
          Length = 195

 Score =  142 bits (344), Expect = 6e-34
 Identities = 72/177 (40%), Positives = 113/177 (63%), Gaps = 5/177 (2%)

Query: 1   MSAVVSDCFTIGSIVATRTCYNENIEGEVLAFDPQTKMLILKCQSSSGNPKRHDVNIVNL 60
           M+A   + F++GS V+ RTC  + ++GEV+AFD Q+KML LKC SSSG P   D+ ++NL
Sbjct: 1   MAAPPGEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINL 60

Query: 61  SLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAI 120
             VS+V+I  + +  P P  SLN+ +L ++ R   E K     A+SA +  EGQ+LF  I
Sbjct: 61  QYVSEVEIINDRTETPPPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTI 120

Query: 121 ARVIDDVSWAGQSIRVYNNKIHQVMITPPYKVDDVIGEKDSQSYNYIKKFVERHWRD 177
            + I D  W  ++I V    + +V+ITPPY+V++  G K+  + ++++K VE+H+RD
Sbjct: 121 HKTIKDCKWQEKNIVV----MEEVVITPPYQVENCKG-KEGSALSHVRKIVEKHFRD 172


>BC105288-1|AAI05289.1|  131|Homo sapiens LSM12 protein protein.
          Length = 131

 Score =  100 bits (240), Expect = 3e-21
 Identities = 53/129 (41%), Positives = 79/129 (61%), Gaps = 3/129 (2%)

Query: 1   MSAVVSDCFTIGSIVATRTCYNENIEGEVLAFDPQTKMLIL---KCQSSSGNPKRHDVNI 57
           M+A   + F++GS V+ RTC  + ++GEV+AFD Q+KML L   +C SSSG P   D+ +
Sbjct: 1   MAAPPGEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALISPECPSSSGKPNHADILL 60

Query: 58  VNLSLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLF 117
           +NL  VS+V+I  + +  P P  SLN+ +L ++ R   E K     A+SA +  EGQ+LF
Sbjct: 61  INLQYVSEVEIINDRTETPPPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLF 120

Query: 118 MAIARVIDD 126
             I + I D
Sbjct: 121 QTIHKTIKD 129


>DQ021880-1|AAY26398.1|  724|Homo sapiens GRB2-associated binding
           protein 1 protein.
          Length = 724

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 33  DPQTKMLILKCQSSSGNPKRHDVNIVNLSLVSDVQIKKEVSTVPEPPQSLNLHRLN 88
           DPQ  +L++ CQS    P R   +    S  S+      V +   P  S + H +N
Sbjct: 179 DPQDYLLLINCQSKKPEPTRTHADSAK-STSSETDCNDNVPSHKNPASSQSKHGMN 233


>BC064848-1|AAH64848.1|  724|Homo sapiens GRB2-associated binding
           protein 1 protein.
          Length = 724

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 33  DPQTKMLILKCQSSSGNPKRHDVNIVNLSLVSDVQIKKEVSTVPEPPQSLNLHRLN 88
           DPQ  +L++ CQS    P R   +    S  S+      V +   P  S + H +N
Sbjct: 179 DPQDYLLLINCQSKKPEPTRTHADSAK-STSSETDCNDNVPSHKNPASSQSKHGMN 233


>AC104685-1|AAY40964.1|  670|Homo sapiens unknown protein.
          Length = 670

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 33  DPQTKMLILKCQSSSGNPKRHDVNIVNLSLVSDVQIKKEVSTVPEPPQSLNLHRLN 88
           DPQ  +L++ CQS    P R   +    S  S+      V +   P  S + H +N
Sbjct: 155 DPQDYLLLINCQSKKPEPTRTHADSAK-STSSETDCNDNVPSHKNPASSQSKHGMN 209


>AB029030-1|BAA83059.1| 1278|Homo sapiens KIAA1107 protein protein.
          Length = 1278

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 14  IVATRTCYNENIEGEVLAF-DPQTKM----LILKCQSSSGNPKRHDVNIVNLSLVSDVQI 68
           IVA     N++ +GE L   D + KM    +I K Q SS  P +H+ + V  S+  DV+ 
Sbjct: 402 IVAMPKNLNQSKKGETLNNKDSKQKMPPGQVISKTQPSSQRPLKHETSTVQKSMFHDVRD 461

Query: 69  KKEVSTVPE 77
                +V E
Sbjct: 462 NNNKDSVSE 470


>X16479-1|CAA34500.2|  225|Homo sapiens topoisomerase I protein.
          Length = 225

 Score = 29.1 bits (62), Expect = 9.5
 Identities = 20/102 (19%), Positives = 47/102 (46%), Gaps = 4/102 (3%)

Query: 19  TCYNENIEGEVLAFDPQTKMLILKCQSSSGNPKRHDVNIVNLSLVSDVQIKKEVSTVPEP 78
           T  +ENI  ++L+++   + + + C      PK  + +++NL   + +  KKE   + + 
Sbjct: 66  TAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQ--TKIDAKKE--QLADA 121

Query: 79  PQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAI 120
            + L   + + +V    + K+ + S   A    E Q + + +
Sbjct: 122 RRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEV 163


>U07806-1|AAB60380.1|  761|Homo sapiens DNA topoisomerase I protein.
          Length = 761

 Score = 29.1 bits (62), Expect = 9.5
 Identities = 20/102 (19%), Positives = 47/102 (46%), Gaps = 4/102 (3%)

Query: 19  TCYNENIEGEVLAFDPQTKMLILKCQSSSGNPKRHDVNIVNLSLVSDVQIKKEVSTVPEP 78
           T  +ENI  ++L+++   + + + C      PK  + +++NL   + +  KKE   + + 
Sbjct: 602 TAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQ--TKIDAKKE--QLADA 657

Query: 79  PQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAI 120
            + L   + + +V    + K+ + S   A    E Q + + +
Sbjct: 658 RRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEV 699


>U07804-1|AAB60379.1|  761|Homo sapiens DNA topoisomerase I protein.
          Length = 761

 Score = 29.1 bits (62), Expect = 9.5
 Identities = 20/102 (19%), Positives = 47/102 (46%), Gaps = 4/102 (3%)

Query: 19  TCYNENIEGEVLAFDPQTKMLILKCQSSSGNPKRHDVNIVNLSLVSDVQIKKEVSTVPEP 78
           T  +ENI  ++L+++   + + + C      PK  + +++NL   + +  KKE   + + 
Sbjct: 602 TAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQ--TKIDAKKE--QLADA 657

Query: 79  PQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAI 120
            + L   + + +V    + K+ + S   A    E Q + + +
Sbjct: 658 RRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEV 699


>M60706-1|AAA61206.1|  765|Homo sapiens topoisomerase I protein.
          Length = 765

 Score = 29.1 bits (62), Expect = 9.5
 Identities = 20/102 (19%), Positives = 47/102 (46%), Gaps = 4/102 (3%)

Query: 19  TCYNENIEGEVLAFDPQTKMLILKCQSSSGNPKRHDVNIVNLSLVSDVQIKKEVSTVPEP 78
           T  +ENI  ++L+++   + + + C      PK  + +++NL   + +  KKE   + + 
Sbjct: 606 TAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQ--TKIDAKKE--QLADA 661

Query: 79  PQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAI 120
            + L   + + +V    + K+ + S   A    E Q + + +
Sbjct: 662 RRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEV 703


>J03250-1|AAA61207.1|  765|Homo sapiens TOP1 protein.
          Length = 765

 Score = 29.1 bits (62), Expect = 9.5
 Identities = 20/102 (19%), Positives = 47/102 (46%), Gaps = 4/102 (3%)

Query: 19  TCYNENIEGEVLAFDPQTKMLILKCQSSSGNPKRHDVNIVNLSLVSDVQIKKEVSTVPEP 78
           T  +ENI  ++L+++   + + + C      PK  + +++NL   + +  KKE   + + 
Sbjct: 606 TAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQ--TKIDAKKE--QLADA 661

Query: 79  PQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAI 120
            + L   + + +V    + K+ + S   A    E Q + + +
Sbjct: 662 RRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEV 703


>BC000943-1|AAH00943.1|  176|Homo sapiens Unknown (protein for
           IMAGE:3448011) protein.
          Length = 176

 Score = 29.1 bits (62), Expect = 9.5
 Identities = 20/102 (19%), Positives = 47/102 (46%), Gaps = 4/102 (3%)

Query: 19  TCYNENIEGEVLAFDPQTKMLILKCQSSSGNPKRHDVNIVNLSLVSDVQIKKEVSTVPEP 78
           T  +ENI  ++L+++   + + + C      PK  + +++NL   + +  KKE   + + 
Sbjct: 17  TAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQ--TKIDAKKE--QLADA 72

Query: 79  PQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAI 120
            + L   + + +V    + K+ + S   A    E Q + + +
Sbjct: 73  RRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEV 114


>AL035652-1|CAI19767.1|  765|Homo sapiens topoisomerase (DNA) I
           protein.
          Length = 765

 Score = 29.1 bits (62), Expect = 9.5
 Identities = 20/102 (19%), Positives = 47/102 (46%), Gaps = 4/102 (3%)

Query: 19  TCYNENIEGEVLAFDPQTKMLILKCQSSSGNPKRHDVNIVNLSLVSDVQIKKEVSTVPEP 78
           T  +ENI  ++L+++   + + + C      PK  + +++NL   + +  KKE   + + 
Sbjct: 606 TAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQ--TKIDAKKE--QLADA 661

Query: 79  PQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAI 120
            + L   + + +V    + K+ + S   A    E Q + + +
Sbjct: 662 RRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEV 703


>AL022394-1|CAI42886.1|  765|Homo sapiens topoisomerase (DNA) I
           protein.
          Length = 765

 Score = 29.1 bits (62), Expect = 9.5
 Identities = 20/102 (19%), Positives = 47/102 (46%), Gaps = 4/102 (3%)

Query: 19  TCYNENIEGEVLAFDPQTKMLILKCQSSSGNPKRHDVNIVNLSLVSDVQIKKEVSTVPEP 78
           T  +ENI  ++L+++   + + + C      PK  + +++NL   + +  KKE   + + 
Sbjct: 606 TAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQ--TKIDAKKE--QLADA 661

Query: 79  PQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAI 120
            + L   + + +V    + K+ + S   A    E Q + + +
Sbjct: 662 RRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEV 703


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.318    0.132    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,584,402
Number of Sequences: 224733
Number of extensions: 1070780
Number of successful extensions: 2032
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2024
Number of HSP's gapped (non-prelim): 15
length of query: 185
length of database: 73,234,838
effective HSP length: 86
effective length of query: 99
effective length of database: 53,907,800
effective search space: 5336872200
effective search space used: 5336872200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)