GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001733-TA|BGIBMGA001733-PA|undefined
         (185 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   0.78 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   1.4  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   1.8  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   2.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   5.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.6  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 0.78
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 50  PKRHDVNIVNLSLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIEN 97
           P R   N  + S   D   +  +S  P+PPQ     +L++   + IE+
Sbjct: 537 PHRRRANSGSTSSGDDELHRASLSKTPQPPQCPRFRKLDSPSDSGIES 584


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 51  KRHDVNIVNLSLVSDVQIKKEVSTVPEPP 79
           K  +VN ++  +  +V+IK +V+  P PP
Sbjct: 313 KSLEVNHISARVGDNVEIKCDVTGTPPPP 341


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 7/15 (46%), Positives = 13/15 (86%)

Query: 68 IKKEVSTVPEPPQSL 82
          ++  +S+VP+PP+SL
Sbjct: 49 VENTISSVPQPPRSL 63


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 57  IVNLSLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACL 109
           +  L +VS + ++ +  T+    ++LNL  +++ + +  E   R    + ACL
Sbjct: 8   LFTLCIVSYMMVRCDDITLCLKQENLNLDDIDSLLEDESERMLRKRGCIEACL 60


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 165 NYIKKFVERHWRD 177
           NY+ KFV  +W +
Sbjct: 338 NYLTKFVSEYWME 350


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/39 (23%), Positives = 18/39 (46%)

Query: 58  VNLSLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIE 96
           +N     ++Q+      VP+P +S     L   V ++I+
Sbjct: 174 INFDKYDNIQVNVSGDNVPQPIESFEAAGLRNIVLDNIK 212


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.132    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,568
Number of Sequences: 429
Number of extensions: 2544
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 185
length of database: 140,377
effective HSP length: 54
effective length of query: 131
effective length of database: 117,211
effective search space: 15354641
effective search space used: 15354641
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)