Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001733-TA|BGIBMGA001733-PA|undefined
(185 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g04620.2 68418.m00464 aminotransferase class I and II family ... 29 1.9
At5g04620.1 68418.m00465 aminotransferase class I and II family ... 29 1.9
At3g55820.1 68416.m06202 hypothetical protein 29 2.5
At5g38210.1 68418.m04606 serine/threonine protein kinase family ... 28 3.3
At3g29040.1 68416.m03633 receptor-like protein kinase-related co... 28 3.3
At1g66880.1 68414.m07601 serine/threonine protein kinase family ... 28 3.3
At1g77780.1 68414.m09057 glycosyl hydrolase family 17 protein si... 28 4.4
At5g53990.1 68418.m06716 glycosyltransferase family protein cont... 27 5.8
At5g37040.1 68418.m04442 F-box family protein contains Pfam prof... 27 5.8
At5g45610.1 68418.m05605 expressed protein 27 7.6
At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa... 27 7.6
At2g03810.2 68415.m00341 18S pre-ribosomal assembly protein gar2... 27 7.6
At2g03810.1 68415.m00340 18S pre-ribosomal assembly protein gar2... 27 7.6
>At5g04620.2 68418.m00464 aminotransferase class I and II family
protein similar to 8-amino-7-oxononanoate synthase,
Bacillus sphaericus, PIR:JQ0512 [SP|P22806], Bacillus
subtilis [SP|P53556]; contains Pfam protile PF00155
aminotransferase, classes I and II
Length = 476
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 78 PPQSLNLHRLNTRVRNSIENKRRLVSALSACLD 110
PP S L R+ ++ E+ ++L++ALS+CLD
Sbjct: 429 PPNSCRL-RVTLSAAHTTEDVKKLITALSSCLD 460
>At5g04620.1 68418.m00465 aminotransferase class I and II family
protein similar to 8-amino-7-oxononanoate synthase,
Bacillus sphaericus, PIR:JQ0512 [SP|P22806], Bacillus
subtilis [SP|P53556]; contains Pfam protile PF00155
aminotransferase, classes I and II
Length = 343
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 78 PPQSLNLHRLNTRVRNSIENKRRLVSALSACLD 110
PP S L R+ ++ E+ ++L++ALS+CLD
Sbjct: 296 PPNSCRL-RVTLSAAHTTEDVKKLITALSSCLD 327
>At3g55820.1 68416.m06202 hypothetical protein
Length = 204
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 149 PYKVDDV-IGEKDSQSYNYIKKFVERHWRDR 178
PYKV++V IG ++ SY + F + WR R
Sbjct: 122 PYKVEEVDIGNDETASYESLSGFTLQIWRKR 152
>At5g38210.1 68418.m04606 serine/threonine protein kinase family
protein contains protein kinase domain, Pfam:PF00069;
contains serine/threonine protein kinase domain,
INTERPRO:IPR002290
Length = 686
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 20 CYNENIEGEVLAFDPQTKMLILKCQSSSGNPKRHDVNIVNLSLVSDVQ 67
CY N + +V +F LI ++ RHD+N+ N++ +S +Q
Sbjct: 532 CYRLNEKSDVYSFGVVLSELISSKEAVDITRHRHDINLANMA-ISKIQ 578
>At3g29040.1 68416.m03633 receptor-like protein kinase-related
contains Pfam profile: PF01657 Domain of unknown
function that is usually associated with protein kinase
domain Pfam:PF00069
Length = 248
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 21 YNENIEGEVLAFDPQTKMLILKCQSSSGNPKRH 53
YN N+E ++ DP ++L+C+ S K H
Sbjct: 61 YNSNVEAYEVSKDPNIVFVLLQCRGDSYGSKCH 93
>At1g66880.1 68414.m07601 serine/threonine protein kinase family
protein contains protein kinase domain, Pfam:PF00069;
contains serine/threonine protein kinase domain,
INTERPRO:IPR002290
Length = 1296
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 20 CYNENIEGEVLAFDPQTKMLILKCQSSSGNPKRHDVNIVNLSLVSDVQ 67
CY N + +V +F LI ++ RHD+N+ N++ VS +Q
Sbjct: 1141 CYQLNEKSDVYSFGVVLTELISSKEAVDITRHRHDINLANMA-VSKIQ 1187
>At1g77780.1 68414.m09057 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase precursor GI:4097946 from
[Oryza sativa]
Length = 363
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 19 TCYNENIEGEVLAFDPQTKMLILKCQSSSGNPKRHDVNIVNLSLVSD 65
T NE IEGE+ + PQ I + GN K H +++ + +++
Sbjct: 112 TVGNEVIEGEIGRYVPQAMKNIKAALTEIGNSKIHVTTVISTAALAN 158
>At5g53990.1 68418.m06716 glycosyltransferase family protein
contains Pfam profile: PF00201 UDP-glucoronosyl and
UDP-glucosyl transferase
Length = 447
Score = 27.5 bits (58), Expect = 5.8
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 61 SLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAI 120
SLVSD QI V Q LN ++ + S+E KR S + L +AI
Sbjct: 345 SLVSDCQI---VLLPYLCDQILNTRLMSEELEVSVEVKREETGWFSK------ESLSVAI 395
Query: 121 ARVIDDVSWAGQSIRVYNNKIHQVMITP 148
V+D S G +R + K+ +V+++P
Sbjct: 396 TSVMDKDSELGNLVRRNHAKLKEVLVSP 423
>At5g37040.1 68418.m04442 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 242
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 78 PPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPE 112
PP+SL+ R + N++ +RL++ AC PE
Sbjct: 19 PPRSLHCFRSVCKEWNALSRDKRLINKNFACAPPE 53
>At5g45610.1 68418.m05605 expressed protein
Length = 633
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 33 DPQTKMLILKCQSSSGNPKRHDVNIVNLSLVSDVQIKKEVSTVPEPPQSLNLHRLNT 89
D K+L + S+ +P+++ ++ + L+ +D+QI + PPQ LN T
Sbjct: 214 DLSKKLLDIWRTSNYQDPRKNLISELLLACSTDLQILFSFMKISTPPQELNKQEAKT 270
>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
family protein predicted proteins, Arabidopsis thaliana
; contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 411
Score = 27.1 bits (57), Expect = 7.6
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 45 SSSGNPKRHDVNIVNLSLVSDVQIKKEVSTVPEPPQSLN-LHRLNTRVRNSIEN-KRRLV 102
SSS K V V+ S S Q+ + P+P SL L L+ + + S+ N +RRL+
Sbjct: 27 SSSSQVKEQSVEDVSRSQPSGSQLDVSIQIPPKPTPSLGILRNLSLKRKASLPNYERRLL 86
>At2g03810.2 68415.m00341 18S pre-ribosomal assembly protein
gar2-related contains weak similarity to
Swiss-Prot:P41891 protein gar2 [Schizosaccharomyces
pombe]
Length = 439
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 50 PKRHDVNIVNLSLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKR 99
PK+ + + ++S + + K + PE P++ N H+ N V NS E+ +
Sbjct: 304 PKQGEEKLSSVSTTTSQEPNKTCNE-PEKPETENHHQQNCLVENSYEDDK 352
>At2g03810.1 68415.m00340 18S pre-ribosomal assembly protein
gar2-related contains weak similarity to
Swiss-Prot:P41891 protein gar2 [Schizosaccharomyces
pombe]
Length = 439
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 50 PKRHDVNIVNLSLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKR 99
PK+ + + ++S + + K + PE P++ N H+ N V NS E+ +
Sbjct: 304 PKQGEEKLSSVSTTTSQEPNKTCNE-PEKPETENHHQQNCLVENSYEDDK 352
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.132 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,558,763
Number of Sequences: 28952
Number of extensions: 180625
Number of successful extensions: 482
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 475
Number of HSP's gapped (non-prelim): 14
length of query: 185
length of database: 12,070,560
effective HSP length: 77
effective length of query: 108
effective length of database: 9,841,256
effective search space: 1062855648
effective search space used: 1062855648
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)
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