Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001732-TA|BGIBMGA001732-PA|undefined
         (214 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09890.1 68414.m01113 expressed protein ; expression supporte...    31   0.78 
At1g31010.1 68414.m03797 expressed protein contains Pfam PF05329...    30   1.0  
At5g62620.1 68418.m07859 galactosyltransferase family protein co...    29   1.8  
At2g25420.1 68415.m03045 transducin family protein / WD-40 repea...    29   1.8  
At5g66450.1 68418.m08380 phosphatidic acid phosphatase-related /...    29   2.4  
At3g61530.2 68416.m06892 ketopantoate hydroxymethyltransferase f...    29   3.1  
At3g61530.1 68416.m06891 ketopantoate hydroxymethyltransferase f...    29   3.1  
At2g41460.1 68415.m05122 apurinic endonuclease-redox protein / D...    28   4.2  
At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50...    28   4.2  
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea...    28   4.2  
At5g62090.2 68418.m07793 expressed protein                             28   5.5  
At5g62090.1 68418.m07792 expressed protein                             28   5.5  
At1g16010.1 68414.m01920 magnesium transporter CorA-like family ...    27   9.6  

>At1g09890.1 68414.m01113 expressed protein ; expression supported
           by MPSS
          Length = 633

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 92  VYINCWRDDSNDWVWEWSSRPDQL--PPKDWRFKHPQS 127
           VY+N   DD ND +W W     Q+    + W +  P S
Sbjct: 288 VYLNSSTDDDNDPLWLWQDAKSQMNVEAESWPYSFPAS 325


>At1g31010.1 68414.m03797 expressed protein contains Pfam PF05329:
           Protein of unknown function (DUF731)
          Length = 360

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 99  DDSNDWVWEWSSRPDQLPPKDWRFKHPQSVRGPPSATSSIEVLEQQLAPPVMQQSHCLSV 158
           D+ N W   W +R D+  PK   FKH ++  G   + S   VLE +L PP  + S    V
Sbjct: 301 DNMNKW---WDNRVDKRTPKSPDFKHKETGVGLWLSDSPSWVLE-KLPPPKSKTSDIYGV 356

Query: 159 R 159
           +
Sbjct: 357 Q 357


>At5g62620.1 68418.m07859 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 681

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/40 (40%), Positives = 20/40 (50%)

Query: 21  WVLGLKSWVELNSGGGLAAVENEYIRLLREAQRESRDSSV 60
           W +G K W EL SG  L A+E E  + + E    S   SV
Sbjct: 136 WEVGRKIWEELESGKTLKALEKEKKKKIEEHGTNSCSLSV 175


>At2g25420.1 68415.m03045 transducin family protein / WD-40 repeat
           family protein contains Pfam PF00400: WD domain, G-beta
           repeat (3 repeats)
          Length = 717

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 13/83 (15%)

Query: 91  GVYINCWRDDSNDWVWEWSSRPDQLPPKDWRFKHPQSVRGPPSATSSIEVLEQQLAPPVM 150
           G YI    +D+   +W WSS  ++      R   PQS +           +E ++A  V 
Sbjct: 384 GDYILALAEDATHKLWTWSSSQNEFCKP--RLHQPQSGK----------TMENEMATSVQ 431

Query: 151 QQSHCLSVRRTCLFS-RGAIVAV 172
           + + C +V+ + LFS  G  +AV
Sbjct: 432 KSTSCFAVKGSYLFSTSGGKIAV 454


>At5g66450.1 68418.m08380 phosphatidic acid phosphatase-related /
           PAP2-related contains Pfam profile PF01569: PAP2
           superfamily
          Length = 286

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 148 PVMQQSHCLSVRRTCLFSRGAIVAVLATNIVSLLLGAGI----GYSNWVNLIESL 198
           P M  SH  S+    +FS  +++  L TN++SL L   I     Y  W+ + + L
Sbjct: 166 PGMPSSHAQSISFISVFSVFSVMEWLGTNVLSLFLSGFILALGSYFTWLRVSQKL 220


>At3g61530.2 68416.m06892 ketopantoate hydroxymethyltransferase
           family protein similar to SP|Q9Y7B6
           3-methyl-2-oxobutanoate hydroxymethyltransferase (EC
           2.1.2.11) (Ketopantoate hydroxymethyltransferase)
           {Emericella nidulans}; contains Pfam profile PF02548:
           Ketopantoate hydroxymethyltransferase
          Length = 354

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 136 SSIEVLEQQLAPPVMQQSHCLSVRRTCLFSRGAIVAVLATNIVSLLLGAGIGYSNWVNLI 195
           S+++V+E  +A   +Q++ C SV   C+    A  A  A NI ++ +GAG   S  V + 
Sbjct: 202 SAVKVVETAMA---LQEAGCFSVVLECVPPPVAAAATSALNIPTIGIGAGPFCSGQVLVY 258

Query: 196 ESLM 199
             L+
Sbjct: 259 HDLL 262


>At3g61530.1 68416.m06891 ketopantoate hydroxymethyltransferase
           family protein similar to SP|Q9Y7B6
           3-methyl-2-oxobutanoate hydroxymethyltransferase (EC
           2.1.2.11) (Ketopantoate hydroxymethyltransferase)
           {Emericella nidulans}; contains Pfam profile PF02548:
           Ketopantoate hydroxymethyltransferase
          Length = 354

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 136 SSIEVLEQQLAPPVMQQSHCLSVRRTCLFSRGAIVAVLATNIVSLLLGAGIGYSNWVNLI 195
           S+++V+E  +A   +Q++ C SV   C+    A  A  A NI ++ +GAG   S  V + 
Sbjct: 202 SAVKVVETAMA---LQEAGCFSVVLECVPPPVAAAATSALNIPTIGIGAGPFCSGQVLVY 258

Query: 196 ESLM 199
             L+
Sbjct: 259 HDLL 262


>At2g41460.1 68415.m05122 apurinic endonuclease-redox protein /
           DNA-(apurinic or apyrimidinic site) lyase identical to
           apurinic endonuclease-redox protein SP: P45951 from
           [Arabidopsis thaliana]
          Length = 536

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 108 WSSRPDQLPPKDWRFKHPQSVRGP--PSATSSIEVL 141
           W+    + P KDW+  +P+++R P  P  T  ++V+
Sbjct: 244 WTVLAHKKPQKDWKAYNPKTMRPPPLPEGTKCVKVM 279


>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
            identical to DNA repair-recombination protein GI:7110148
            from [Arabidopsis thaliana]
          Length = 1316

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/19 (57%), Positives = 16/19 (84%)

Query: 35   GGLAAVENEYIRLLREAQR 53
            GG+AAVE E +++LRE +R
Sbjct: 1063 GGIAAVEAEIVKILRERER 1081


>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
           family protein contains similarity to cockayne syndrome
           complementation group A protein GB:U28413 GI:975301 from
           [Homo sapiens]; confirmed by cDNA gi:1598289
          Length = 450

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 126 QSVRGPPSATSSIEVLEQQLAPPVMQQSHCLSVRRTCLFSRGAIVAVLATNIVSLLLGAG 185
           QSV+G  SA +S+E   Q+   P M     LS         GA+  + ATN    LL AG
Sbjct: 277 QSVKGSSSAKASVEKSRQKRIHPGM-----LSTLDRATAHYGAVTGLKATNDGMYLLSAG 331


>At5g62090.2 68418.m07793 expressed protein
          Length = 816

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 114 QLPPKDWRFKHPQSVRGPPSATSSIEVLEQQLAPPVMQQ 152
           Q+P   +     Q  + PPS +S  + LEQQ+   + QQ
Sbjct: 686 QMPSSSYNGSTQQYHQQPPSCSSGNQTLEQQMIHQIWQQ 724


>At5g62090.1 68418.m07792 expressed protein
          Length = 816

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 114 QLPPKDWRFKHPQSVRGPPSATSSIEVLEQQLAPPVMQQ 152
           Q+P   +     Q  + PPS +S  + LEQQ+   + QQ
Sbjct: 686 QMPSSSYNGSTQQYHQQPPSCSSGNQTLEQQMIHQIWQQ 724


>At1g16010.1 68414.m01920 magnesium transporter CorA-like family
          protein (MRS2-1) low similarity to SP|Q01926 RNA
          splicing protein MRS2, mitochondrial precursor
          {Saccharomyces cerevisiae}; contains Pfam profile
          PF01544: CorA-like Mg2+ transporter protein
          Length = 442

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 24 GLKSWVELNSGGGLAAVENEYIRLLREAQRESRD 57
          GL+SW+ +++ G    +E +   ++R     +RD
Sbjct: 49 GLRSWIRVDTSGNTQVMEVDKFTMMRRCDLPARD 82


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.132    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,802,682
Number of Sequences: 28952
Number of extensions: 176298
Number of successful extensions: 467
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 458
Number of HSP's gapped (non-prelim): 14
length of query: 214
length of database: 12,070,560
effective HSP length: 78
effective length of query: 136
effective length of database: 9,812,304
effective search space: 1334473344
effective search space used: 1334473344
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)