GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001732-TA|BGIBMGA001732-PA|undefined
         (214 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   1.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   1.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   5.6  

>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/46 (23%), Positives = 21/46 (45%)

Query: 2    LFSSISAFTTSNQHFLGLPWVLGLKSWVELNSGGGLAAVENEYIRL 47
            LF  I    T  + +L + W  G+K+ +  +       +  EY++L
Sbjct: 1278 LFVLIVFLLTLKKDYLHIKWPFGVKTNITYDESTQEVHISKEYLQL 1323


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/46 (23%), Positives = 21/46 (45%)

Query: 2    LFSSISAFTTSNQHFLGLPWVLGLKSWVELNSGGGLAAVENEYIRL 47
            LF  I    T  + +L + W  G+K+ +  +       +  EY++L
Sbjct: 1278 LFVLIVFLLTLKKDYLHIKWPFGVKTNITYDESTQEVHISKEYLQL 1323


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 10/46 (21%), Positives = 20/46 (43%)

Query: 131 PPSATSSIEVLEQQLAPPVMQQSHCLSVRRTCLFSRGAIVAVLATN 176
           PP   +    L         QQSH L +     F+R ++  +++++
Sbjct: 139 PPQTAAMAAYLNAAAVAAAAQQSHRLMMTSPSGFNRASVSPLISSS 184


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.132    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,685
Number of Sequences: 317
Number of extensions: 1651
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 214
length of database: 114,650
effective HSP length: 54
effective length of query: 160
effective length of database: 97,532
effective search space: 15605120
effective search space used: 15605120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)