GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001732-TA|BGIBMGA001732-PA|undefined
         (214 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe...    31   0.17 
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    27   2.1  
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.6  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    25   6.4  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    25   6.4  

>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 5/82 (6%)

Query: 130 GPPSATSSIEVLEQQLAPPVMQQSHCLSVRRTCLFSRGAIVAVLATNIVSLLLGAGIGYS 189
           GPPS  +  +V+ Q+L    +QQS+ ++++  C+F + A   + A  I     G+   Y+
Sbjct: 108 GPPSDLA--QVVSQELHQ-TLQQSNLINLQSLCIFEKKAAWVLYADIICLNYDGSAFDYA 164

Query: 190 NWVNLIESLMKNIELSMLIPNE 211
            W  L  +L K ++L   + +E
Sbjct: 165 -WAALFAAL-KTVKLPTAVWDE 184


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/51 (27%), Positives = 26/51 (50%)

Query: 131 PPSATSSIEVLEQQLAPPVMQQSHCLSVRRTCLFSRGAIVAVLATNIVSLL 181
           P    + +  L QQLA  +      ++ R  CL+S     ++++ N+V+LL
Sbjct: 497 PSEFVNIMSPLFQQLARSISSMHFQVAERALCLWSNEYFTSLVSQNVVTLL 547


>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 242

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 16 FLGLPWVLGLKSWVELNSGGGLAAVENEYIRLLREAQRESRDSSVRHS 63
          F  LP+   LKSW+ + SG G + +  +   L  EA+R  +   + +S
Sbjct: 45 FRRLPF--SLKSWLVIGSGSGASIIFADKAGLKFEAERYGKFDQIDYS 90


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 151 QQSHCLSVRRTCLFSRGAIVAVLATNIVSLLLGAGIGYSNWVNLIESLMKNI 202
           +Q   L+    C    GA   ++AT +  +   +G+    W+ +IE L+  I
Sbjct: 165 EQGKRLAYLYVCSCFSGAFGGLIATGLTKIPKSSGLPNWGWLYIIEGLISAI 216


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 9/76 (11%)

Query: 88  ELKGVYINCWRDDSNDWVWEWSSRPDQLPPKDWRFKHPQSVRGPPSATSSIEVLEQQLAP 147
           EL  + ++     +ND   E SS  D+L PKD        V    S +  IE L  +   
Sbjct: 751 ELVVLELHTLEQQANDLKSELSSEMDELDPKD--------VEALKSLSGQIENLSHEFDA 802

Query: 148 PVMQQSHCLSVRRTCL 163
            + +++H +  R+T L
Sbjct: 803 IIKERAH-IEARKTAL 817


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.132    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 895,860
Number of Sequences: 5004
Number of extensions: 31449
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 85
Number of HSP's gapped (non-prelim): 5
length of query: 214
length of database: 2,362,478
effective HSP length: 70
effective length of query: 144
effective length of database: 2,012,198
effective search space: 289756512
effective search space used: 289756512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)