Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001732-TA|BGIBMGA001732-PA|undefined
(214 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0815 - 7914634-7914740,7915262-7915357,7922268-7922328,792... 31 0.53
07_03_0964 - 22989470-22989618,22989729-22990476 31 0.53
03_06_0225 - 32487592-32487710,32487860-32488325,32489124-324892... 30 1.2
12_01_0295 + 2235209-2235263,2236182-2236361,2236478-2236567,223... 29 2.8
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 29 2.8
09_04_0254 + 16131779-16132475,16132609-16132768,16132944-161329... 28 5.0
08_02_0880 + 22203440-22204324,22204763-22204876,22204964-222054... 28 5.0
01_01_0881 - 6908939-6909190,6909298-6909351,6909588-6909734,690... 28 6.6
06_03_1122 - 27775141-27775333,27775414-27775604,27775907-277770... 27 8.7
06_03_0640 - 23059473-23060489,23060592-23060651,23063163-230632... 27 8.7
04_04_0871 + 28898262-28898534,28899552-28900015,28900242-289003... 27 8.7
02_05_1124 - 34279570-34279765,34280074-34280158,34280236-342802... 27 8.7
>08_01_0815 -
7914634-7914740,7915262-7915357,7922268-7922328,
7922365-7923621
Length = 506
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 147 PPVMQQSHCLSVRRTCLFSRGAIVAVLATNIVSLLLGAGIGYSNW 191
PP+ + CLF RGA+++VLA NIV + + G W
Sbjct: 159 PPLSPEEEAKFEASDCLF-RGALISVLADNIVDVYMHMPSGKDMW 202
>07_03_0964 - 22989470-22989618,22989729-22990476
Length = 298
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 147 PPVMQQSHCLSVRRTCLFSRGAIVAVLATNIVSLLLGAGIGYSNW 191
PP+ + CLF RGA+++VLA NIV + + G W
Sbjct: 14 PPLSPEEEAKFEASDCLF-RGALISVLADNIVDVYMHMPSGKDMW 57
>03_06_0225 -
32487592-32487710,32487860-32488325,32489124-32489237,
32489375-32489602,32489773-32490009,32490490-32490594
Length = 422
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 94 INCWRDDSNDWVWEWSSRPDQLPPKDWRFKHPQSVRGPPSATSSIEVLEQQLAPP 148
I ++ D N W W W R + P + RF + G P ++ +++ E + P
Sbjct: 237 ITAFQPDKNSWGWNWLERWMAVRPWESRFLGSYAADGIPVSSGAMQDEENAVYTP 291
>12_01_0295 +
2235209-2235263,2236182-2236361,2236478-2236567,
2236947-2237131,2237200-2237358,2237437-2237589,
2237938-2238264
Length = 382
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 113 DQLPPKDWRFKH---PQSVRGPPSATSSIEVLEQQLAPPVMQQSH 154
D++ ++ F H PQ PP TS +EVL ++ V+++ H
Sbjct: 23 DEITVEETSFVHTEPPQDGTAPPVVTSDMEVLNDKVKKQVIKEGH 67
>01_05_0320 -
20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 147 PPVMQQSHCLSVRRTCLFSRGAIVAVLATNIVSLLL 182
PP+ + CLF RGA+++VLA NIV + +
Sbjct: 14 PPLSPEEEAKFEASDCLF-RGALISVLADNIVDVYM 48
>09_04_0254 +
16131779-16132475,16132609-16132768,16132944-16132992,
16133158-16133271,16133434-16133958,16135538-16135969,
16138882-16138956,16139530-16139625,16140610-16140725,
16140822-16140992,16141080-16141239,16141328-16141513,
16141624-16141752,16141837-16141915,16142034-16142143
Length = 1032
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 178 VSLLLGAGIGYSNWVNLIESLMKNIELS 205
V LL+G GIG + +++++ L+ NI+L+
Sbjct: 834 VLLLVGLGIGATPFISILRDLLNNIKLA 861
>08_02_0880 +
22203440-22204324,22204763-22204876,22204964-22205455,
22205646-22205819,22206589-22206978,22209927-22210022,
22210645-22210760,22210872-22211042,22211126-22211285,
22211388-22211573,22211665-22211793,22211918-22211996,
22212159-22212268
Length = 1033
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 178 VSLLLGAGIGYSNWVNLIESLMKNIELS 205
V LL+G GIG + +++++ L+ NI+L+
Sbjct: 835 VLLLVGLGIGATPFISILRDLLNNIKLA 862
>01_01_0881 -
6908939-6909190,6909298-6909351,6909588-6909734,
6909836-6910042,6910664-6911098
Length = 364
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 136 SSIEVLEQQLAPPVMQQSHCLSVRRTCLFSRGAIVAVLATNIVSLLLGAGIGYSNWVNLI 195
S+++V+E LA +Q++ C SV C+ + A A A I ++ +GAG S V +
Sbjct: 211 SAVKVVETALA---LQEAGCFSVVLECVPAPVAAAATSALQIPTIGIGAGPFCSGQVLVY 267
Query: 196 ESLM 199
L+
Sbjct: 268 HDLL 271
>06_03_1122 -
27775141-27775333,27775414-27775604,27775907-27777099,
27777206-27777353,27777534-27777609,27777696-27777818,
27777886-27778050,27778169-27778259,27778580-27778664,
27778745-27778900,27778992-27779048,27779138-27779236,
27779381-27779499,27780145-27780202
Length = 917
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 114 QLPPKDWRFKHPQSVRGPPSATSSIEVLEQQLAPPVMQQSHCLSVRRTCL 163
Q+ P +F+ PQ++ G + ++L QQ+ P QQ + ++ T +
Sbjct: 458 QVSPTILQFQQPQNIGGRANTLLPSQIL-QQVQPQFQQQQYLQNINETTI 506
>06_03_0640 -
23059473-23060489,23060592-23060651,23063163-23063283,
23063476-23065496
Length = 1072
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 97 WRDDSNDWVWEWSSRPDQLPPKDWRFKHPQSVRGPPSAT-SSIEVLEQQLAPPVMQQSHC 155
W DD +D + EW L + R PQ PP + QQ QQ H
Sbjct: 922 WEDDDDDDIPEWDPNQSNLNLQQTRHAIPQPPLPPPGPVHQQMHAYHQQ---HQQQQQHY 978
Query: 156 LSVRR 160
S+++
Sbjct: 979 QSIQQ 983
>04_04_0871 +
28898262-28898534,28899552-28900015,28900242-28900356,
28900510-28901157,28901282-28901374,28901658-28901795,
28902147-28902206
Length = 596
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 124 HPQSVRGPPSATSSIEVLEQQLAPPVMQQSHCLSVRRTC 162
HP S PSA E + APP+ Q S +R TC
Sbjct: 31 HPSSA---PSAAEPSESIRPAAAPPLSQPSEAPGLRWTC 66
>02_05_1124 -
34279570-34279765,34280074-34280158,34280236-34280275,
34280371-34280460
Length = 136
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 160 RTCLFS-RGAIVAVLATNIVSLLLGAGIGYSNWVNLIESLM 199
RTCL S R A++A+L + + L + A Y+NW ++ LM
Sbjct: 6 RTCLHSGRLALLAILVSGGIVLQILACALYNNWWPMLTVLM 46
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.132 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,214,344
Number of Sequences: 37544
Number of extensions: 231088
Number of successful extensions: 604
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 600
Number of HSP's gapped (non-prelim): 12
length of query: 214
length of database: 14,793,348
effective HSP length: 79
effective length of query: 135
effective length of database: 11,827,372
effective search space: 1596695220
effective search space used: 1596695220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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