GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001732-TA|BGIBMGA001732-PA|undefined
         (214 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50400| Best HMM Match : Tropomodulin (HMM E-Value=0.17)             36   0.034
SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.034
SB_57812| Best HMM Match : CBF (HMM E-Value=2.8)                       34   0.10 
SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.10 
SB_55736| Best HMM Match : NACHT (HMM E-Value=3.2e-14)                 33   0.14 
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.31 
SB_42306| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=1.4)             31   0.55 
SB_44703| Best HMM Match : Extensin_2 (HMM E-Value=0.077)              29   2.2  
SB_4480| Best HMM Match : TAT_ubiq (HMM E-Value=8.2)                   28   6.7  
SB_35375| Best HMM Match : RVT_1 (HMM E-Value=0.00074)                 28   6.7  
SB_15097| Best HMM Match : p450 (HMM E-Value=0)                        28   6.7  
SB_13798| Best HMM Match : RVP (HMM E-Value=1)                         28   6.7  
SB_36642| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_50400| Best HMM Match : Tropomodulin (HMM E-Value=0.17)
          Length = 641

 Score = 35.5 bits (78), Expect = 0.034
 Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 1/41 (2%)

Query: 168 AIVAVLA-TNIVSLLLGAGIGYSNWVNLIESLMKNIELSML 207
           A+V++L+ T + SL+L  GIG +N  NLIESL  N+ LS +
Sbjct: 290 ALVSMLSRTTLQSLILFDGIGEANVGNLIESLKNNVTLSSI 330


>SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1264

 Score = 35.5 bits (78), Expect = 0.034
 Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 1/41 (2%)

Query: 168 AIVAVLA-TNIVSLLLGAGIGYSNWVNLIESLMKNIELSML 207
           A+V++L+ T + SL+L  GIG +N  NLIESL  N+ LS +
Sbjct: 806 ALVSMLSRTTLQSLILFDGIGEANVGNLIESLKNNVTLSSI 846


>SB_57812| Best HMM Match : CBF (HMM E-Value=2.8)
          Length = 262

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 4/50 (8%)

Query: 162 CLFSRG---AIVAVLA-TNIVSLLLGAGIGYSNWVNLIESLMKNIELSML 207
           C F+ G   A+V++L+ T + SL L  G G +N+ NLIESL  N+ LS +
Sbjct: 173 CHFNSGIVKALVSMLSRTTLQSLSLFDGNGEANFGNLIESLKNNVTLSAI 222


>SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1033

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 168 AIVAVLA-TNIVSLLLGAGIGYSNWVNLIESLMKNIELSMLIPNET 212
           A+V++L+ T + SL L  GIG +N  NLIESL  N+ LS +    T
Sbjct: 712 ALVSMLSRTTLQSLSLFDGIGEANVGNLIESLNNNVTLSAICIEST 757


>SB_55736| Best HMM Match : NACHT (HMM E-Value=3.2e-14)
          Length = 696

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 162 CLFSRGAIVAVLA-----TNIVSLLLGAGIGYSNWVNLIESLMKNIELSML 207
           C F+ G IV  L      T + SL L  G G +N+ NLIESL  N+ LS +
Sbjct: 503 CHFNSGDIVKALVSMLSRTTLQSLSLFDGNGEANFGNLIESLKNNVTLSAI 553


>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2480

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 168  AIVAVLA-TNIVSLLLGAGIGYSNWVNLIESLMKNIELS 205
            A+V++L+ T + SL L  GI  +N+ NLIESL  N+ LS
Sbjct: 1983 ALVSMLSRTTLQSLSLFDGIDEANFGNLIESLRNNVTLS 2021


>SB_42306| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=1.4)
          Length = 444

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 168 AIVAVLA-TNIVSLLLGAGIGYSNWVNLIESLMKNIELSMLIPNET 212
           A+V++L+ T + SL L   IG +N  NLIESL  N+ LS +    T
Sbjct: 117 ALVSMLSRTALQSLSLSDEIGEANVGNLIESLKNNVTLSAICIEST 162


>SB_44703| Best HMM Match : Extensin_2 (HMM E-Value=0.077)
          Length = 757

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 126 QSVRGPPSATSSIEVLEQ-QLAPPVMQQSHCLSVRRT 161
           Q +  PP   ++ E L   +L PPV QQ+  L ++RT
Sbjct: 311 QGITTPPPPVTATETLPPARLPPPVQQQASALGMKRT 347


>SB_4480| Best HMM Match : TAT_ubiq (HMM E-Value=8.2)
          Length = 107

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/35 (25%), Positives = 23/35 (65%)

Query: 21 WVLGLKSWVELNSGGGLAAVENEYIRLLREAQRES 55
          W+ G+K+ VE ++G     ++ ++++ L+ AQ ++
Sbjct: 55 WINGVKTTVEPDTGADANVMDEQHLKTLQNAQHQA 89


>SB_35375| Best HMM Match : RVT_1 (HMM E-Value=0.00074)
          Length = 996

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/34 (29%), Positives = 22/34 (64%)

Query: 21  WVLGLKSWVELNSGGGLAAVENEYIRLLREAQRE 54
           W+ G+K+ VE ++G     ++ ++++ L+ AQ E
Sbjct: 162 WINGVKTTVEPDTGADANVMDEQHLKTLQNAQPE 195


>SB_15097| Best HMM Match : p450 (HMM E-Value=0)
          Length = 1310

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/36 (33%), Positives = 23/36 (63%)

Query: 147 PPVMQQSHCLSVRRTCLFSRGAIVAVLATNIVSLLL 182
           PP++Q +  LSV R  +   GA+ AV  T ++++++
Sbjct: 434 PPLLQATSLLSVCRGAMLVEGAVFAVGLTLLIAVVM 469


>SB_13798| Best HMM Match : RVP (HMM E-Value=1)
          Length = 162

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/53 (24%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 2  LFSSISAFTTSNQHFLGLPWVLGLKSWVELNSGGGLAAVENEYIRLLREAQRE 54
          L S++ + T +N+  +   W+ G+K+ +E ++G     ++ ++++ L+ AQ E
Sbjct: 34 LTSTVPSSTKANKCRI---WINGVKTTIEPDTGADANVMDEQHLKTLQNAQPE 83


>SB_36642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/34 (29%), Positives = 22/34 (64%)

Query: 21  WVLGLKSWVELNSGGGLAAVENEYIRLLREAQRE 54
           W+ G+K+ VE ++G     ++ ++++ L+ AQ E
Sbjct: 251 WIDGVKTTVEPDTGADANVMDEQHLKTLQNAQPE 284


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.132    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,551,873
Number of Sequences: 59808
Number of extensions: 221223
Number of successful extensions: 576
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 562
Number of HSP's gapped (non-prelim): 13
length of query: 214
length of database: 16,821,457
effective HSP length: 79
effective length of query: 135
effective length of database: 12,096,625
effective search space: 1633044375
effective search space used: 1633044375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)